View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17864_low_13 (Length: 391)
Name: NF17864_low_13
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 39169967 - 39170322
Alignment:
| Q |
16 |
aaaatccaaaacacatttcctatggtactcgtaaggatgagtagccatctagggtttaatatattcatatttaaatatttatttaatgatataatttctt |
115 |
Q |
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| T |
39169967 |
aaaatccaaaacacatttcctatggtactcgtaaggatgagtagccatctagggtttaatatattcatatttaaatatttatttaatgatataatttctt |
39170066 |
T |
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| Q |
116 |
gaatactcctctaataatatgaatttaatttgtcaatatataattaatcttttaattttatggaacaaatgtgtatgaataaaacttttgaaaaatgatt |
215 |
Q |
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| T |
39170067 |
gaatactcctctaataatatgaatttaatttgtcaata----attaatcttttaattttatggaacaaatgtgcatgaataaaacttttgaaaaatgatt |
39170162 |
T |
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| Q |
216 |
tttccatgagattaagatattaatcataattaatttttcttaaaatcaaaatcataaggagtacctggtaagctttgatgaggggaaggtcaatgatgga |
315 |
Q |
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| T |
39170163 |
tttccatgagattaagatattaatcataattaatttttcttaaaatcaaaatcataaggagtacctggtaagctttgatgaggggaaggtcaatgatgga |
39170262 |
T |
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| Q |
316 |
ggggttgttggcttgaatcccagatatggattgaagaagtcctagattgtgtagagagtg |
375 |
Q |
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| T |
39170263 |
ggggttgttggcttgaatcccagatatggattgaagaagtcctagattgtgtagagagtg |
39170322 |
T |
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