View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17864_low_14 (Length: 387)
Name: NF17864_low_14
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 9236240 - 9235882
Alignment:
| Q |
19 |
gggtaggtattcgttctaaaccaaatgagcagcagaagttgtatatatttctacaaactcctttactgaaaggatgtactctttctggaaccgccctgca |
118 |
Q |
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| T |
9236240 |
gggtaggtattcgttctaaaccaaatgagcagcagaagttgtatatatttctacaaactcctttactgaaaggatgtactcgttctggaaccgccctgca |
9236141 |
T |
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| Q |
119 |
gattaatataatgtgcttaacatagatatcccgaaaaaacagacatctaagcatttaccatcaacatacacatatagcggaaacattcaaagcagtgcaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
9236140 |
gattaatataatgtgcttaacatagatatcccgaaaaaacagacatctaagcatttaccatcaacatacacatatagcggaaacattaaaagaagtgcaa |
9236041 |
T |
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| Q |
219 |
cacaaaacagaatcacgttccaccaaaatgttatctttagatcattaagttaaaaatatgaaataaatacaaaaatataagaggactacttatctaacct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9236040 |
cacaaaacagaatcacgttccaccaaaatgttatctttagatcattaagttaaaaatacgaaataaatacaaaaatataagaggactacttatctaacct |
9235941 |
T |
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| Q |
319 |
tagataaggaatccgtcttctccttacaagttcataggtagtctgatttgtcagaatta |
377 |
Q |
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| T |
9235940 |
tagataaggaatccgtcttctccttacaagttcataggtagtctgatttgtcagaatta |
9235882 |
T |
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