View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17864_low_15 (Length: 385)
Name: NF17864_low_15
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 2816719 - 2817090
Alignment:
| Q |
1 |
ttcacattctcctgcaaagtaaccatcctgtgttatgttatgaggaaacagaacatgcgtgttctattatgttcaaggtgtatctggtcgtaactcccaa |
100 |
Q |
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| T |
2816719 |
ttcacattctcctgcaaagtaaccatcccgtgttatgttatggggaaatagaacatgcatgttctattatgttcaaggcgtatctggtcgtaactcccaa |
2816818 |
T |
|
| Q |
101 |
acttgagtgatcaggagttggaagttaacttctaaacagttccagagttacgaaccatgaagggtatatttgactgtttgaggggtctgtaagcaattca |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2816819 |
acttgagcgatcaggagttggaagttaacttctaaacagttccagagttacgaaccatgaagggtatatttgactgtttgaggggtctgtaagcaattca |
2816918 |
T |
|
| Q |
201 |
aggagcctattgagcaattttcaaatagtgatagcataannnnnnnnnnnnnnnnacgttcatgttcttagatgtaccatataatataattgagagtgta |
300 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2816919 |
aggagcctattgagcaattttctaatagtgatagcataatttttttattttttttacgttcatgttcttagatgtaccatataatataattgagagtgta |
2817018 |
T |
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| Q |
301 |
tacctaatttttctcgttcaggaagattgtataataaatttcaagttgtattgtaaattctgaagtataatg |
372 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2817019 |
tacataatttttctcgttcaggaagattgtataataaatttcaagttgtattgtaaattctgaagtataatg |
2817090 |
T |
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