View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17864_low_17 (Length: 329)
Name: NF17864_low_17
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 42475161 - 42474864
Alignment:
| Q |
20 |
acccattctcacaacaaactagtgccctcatttaatatgactcgtgtattacgtttaaataaatacatgcacgcacccaaatattcgtagttcaagttta |
119 |
Q |
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| T |
42475161 |
acccattctcacaacaaacaagtgccctcatttaatatgactcgtgtattacgtttaaataaatacatgcacgcacccaaatattcgtagttcaagttta |
42475062 |
T |
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| Q |
120 |
acctctaactttgaccatttttcatttccaaaactaaggatgatgaatatttgactgtaatgatgcacttgtaatattccataggtaagttgtactctgt |
219 |
Q |
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| T |
42475061 |
acctctaactttgaccatttttcatttccaaaactaaggatgatgaatatttgactgtaatgatgcacttgtaatattccataggtaagttgtactctgt |
42474962 |
T |
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| Q |
220 |
cagaaatgaacattcaactgtactcagtagtcagtacatactaaagcacatgtaaccattggaaaaaccaagagttgcatatgactcaacaagaataa |
317 |
Q |
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| T |
42474961 |
cagaaatgaacattcaactgtactcagtagccagtacatactaaagcacatgtaaccattggaaaaaccaagagttgcatatgactcaacaagaataa |
42474864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 28 - 248
Target Start/End: Complemental strand, 42480654 - 42480434
Alignment:
| Q |
28 |
tcacaacaaactagtgccctcatttaatatgactcgtgtattacgtttaaataaatacatgcacgcacccaaatattc-gtagttcaagtttaacctcta |
126 |
Q |
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| T |
42480654 |
tcacaacaaactagtgctctcgtttaatatgactagtgtatcatgtgtaaataaatatatgaacgcacacaa-tatactgtagtttaagtttaacctcta |
42480556 |
T |
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| Q |
127 |
actttgaccatttttcatttccaaaactaaggatgatgaatatttgactgtaatgatgcacttgtaatattccataggtaagttgtactctgtcagaaat |
226 |
Q |
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| T |
42480555 |
actctgaccatttttcatttccaaaactaaggatcatgaacatttgactgtaatgatgcacttttaatattccatagcaaaattgtactctgtcagaaat |
42480456 |
T |
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| Q |
227 |
gaacattcaactgtactcagta |
248 |
Q |
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| T |
42480455 |
gcacattcaactgtactcagta |
42480434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 42468254 - 42468195
Alignment:
| Q |
258 |
tactaaagcacatgtaaccattggaaaaacc--aagagttgcatatgactcaacaagaataa |
317 |
Q |
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| T |
42468254 |
tactaaagcacatgtaaccattggaaaaaccttaagatttgc--atgactcaacaagaataa |
42468195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 42480414 - 42480353
Alignment:
| Q |
258 |
tactaaagcacatgtaaccattggaaaaacc--aagagttgcatatgactcaacaagaataa |
317 |
Q |
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|||||| |||||||||||||||||| ||||| |||| |||||||| ||||||||||||||| |
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| T |
42480414 |
tactaatgcacatgtaaccattggagaaaccttaagatttgcatataactcaacaagaataa |
42480353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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