View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17864_low_18 (Length: 317)
Name: NF17864_low_18
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 10415616 - 10415911
Alignment:
| Q |
19 |
ttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
10415616 |
ttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctagatcaagagcgatgtctaacctttgtgccaggctga |
10415715 |
T |
|
| Q |
119 |
gattatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattata |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10415716 |
gattatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattata |
10415815 |
T |
|
| Q |
219 |
atcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctcctcc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
10415816 |
atcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattcctccatgaaactctttgctgctcc |
10415911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 10420503 - 10420798
Alignment:
| Q |
19 |
ttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctga |
118 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| | ||||||| ||||||||| |
|
|
| T |
10420503 |
ttaatatcacagtgaactatggcttgctctgtaccattgtgaagataattaagtgcatgagctacatcaagagcaatgtcaaccctttgtctgaggctga |
10420602 |
T |
|
| Q |
119 |
gattatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattata |
218 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
10420603 |
gattatgaattccagacccttctttatcgtgcagaagcttttctagactccccttaggcatgaactcaaaaacaatagccttgaactcttcacccttata |
10420702 |
T |
|
| Q |
219 |
atcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctcctcc |
314 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| || ||||| ||||||||||||| ||| | || ||| || ||||||||| ||||||||| |
|
|
| T |
10420703 |
atcaacgcttgaacaacaagttaggatcttgacaaggtttcggtgtttcatctttcctagagcttcgcgttctgctttgaaactctttgctcctcc |
10420798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 41 - 304
Target Start/End: Original strand, 10409941 - 10410210
Alignment:
| Q |
41 |
cttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagattatgaattccagaccc--- |
137 |
Q |
| |
|
||||||||| |||| ||||||||||||| | |||||||||||| | ||| | ||||||||||||||||||| ||||||| || ||| |||| | |
|
|
| T |
10409941 |
cttgctctgcatcaatgtgaagataatccaatgcatgagctacgttgagaacaatgtctaacctttgtgtgaaattgagattcagatttctagactcgtg |
10410040 |
T |
|
| Q |
138 |
ttcgttat---cgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaa |
234 |
Q |
| |
|
||| |||| | |||| || ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10410041 |
ttctttattaccatgcaaaaggttttccaaactcccattaggcatgaactcaaaaacaatagccttgaaatcttcacctttataatcaacacttgaacaa |
10410140 |
T |
|
| Q |
235 |
caagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactct |
304 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||| ||||| | ||| ||||||||| ||| |||||||| |
|
|
| T |
10410141 |
caagttaggatcttaacaagattccggtgcttcatgtttcccagagctttgcattccaccacgaaactct |
10410210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 35410934 - 35410649
Alignment:
| Q |
19 |
ttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctga |
118 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
35410934 |
ttaagatcacagtgaactacagcttgctctgtctcattgtgaagataatcaagtgcatgagctacatcaagagcaatgtctaacctttgtgtgaggttga |
35410835 |
T |
|
| Q |
119 |
gattatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattata |
218 |
Q |
| |
|
|||||||| || |||||||||||||||| |||| || |||||| ||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35410834 |
gattatgattttcagacccttcgttatcatgcaaaaacttttctagattcccattaggcattaactcaaaaacaatagccttgaactcttcaccattata |
35410735 |
T |
|
| Q |
219 |
atcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactct |
304 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35410734 |
atcaacacttgaacaacacgttaggattttgacaagattacggtgcctcatctttcttaaagcattgcattccgccatgaaactct |
35410649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 35386273 - 35385978
Alignment:
| Q |
19 |
ttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctga |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |
|
|
| T |
35386273 |
ttaagatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcaatgtctaacctttatgtgaggttga |
35386174 |
T |
|
| Q |
119 |
gattatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattata |
218 |
Q |
| |
|
|||||||| || |||||||||| |||| ||||| || |||||| |||||| | || | |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35386173 |
gattatgattttcagacccttcattattgtgcaaaaacttttcaagactctcatttgacatgaactcaaaaacaatagccttgaaatcttcacccttata |
35386074 |
T |
|
| Q |
219 |
atcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctcctcc |
314 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||| |||| |||| |
|
|
| T |
35386073 |
atcaacacttgaacaacaggttaggaccttgacaagattctggtgcttcatctttcccagagcattgcattctgccatgaaactctttgctgctcc |
35385978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 19 - 302
Target Start/End: Complemental strand, 35755075 - 35754792
Alignment:
| Q |
19 |
ttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctga |
118 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
35755075 |
ttaatatcacagtgaactacgacttgttctgtatcattgtgaagataatccaatgcatgagctacatcaagagcaatgtctaacctttgtgtgaggttga |
35754976 |
T |
|
| Q |
119 |
gattatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattata |
218 |
Q |
| |
|
||||| | |||| |||||||| |||||||||| | |||||| |||||||| || | ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35754975 |
gattaaaatttcctgacccttcattatcgtgcaacaacttttcaagactcccatttgacatgaactcaaaaacaatagctttgaaatcttcaccattata |
35754876 |
T |
|
| Q |
219 |
atcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaact |
302 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
35754875 |
atcaacacttgaacaacaagttaaaatcttgacaagattccggtgcttcatctttcccaatgcattgcattccgctatgaaact |
35754792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 35367121 - 35366826
Alignment:
| Q |
19 |
ttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctga |
118 |
Q |
| |
|
|||| |||||||||||||| || || ||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| | || ||| ||||||||| |
|
|
| T |
35367121 |
ttaatatcacagtgaactatggatttctctgtaccattgtgaagataatcgagtgcatgagctacatcaagagcaatgtcaactctgtgtctgaggctga |
35367022 |
T |
|
| Q |
119 |
gattatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattata |
218 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
35367021 |
gattatgatttccagacccttcgttatcatgcagaagcttttctagacttcccttaggcatgaactcaaaaacaatagccttgaactcttcacccttata |
35366922 |
T |
|
| Q |
219 |
atcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctcctcc |
314 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||| | ||||| || ||||||||| |||| |||| |
|
|
| T |
35366921 |
atcaatgcttgaacaacaagttaggatcttgacaagatttcggtgcttcatctttcctagagcttcacattctgctttgaaactctttgctgctcc |
35366826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 35376673 - 35376372
Alignment:
| Q |
19 |
ttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctga |
118 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||| | |||||||||||| || ||||| ||||||||||||||||||| ||| |
|
|
| T |
35376673 |
ttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattga |
35376574 |
T |
|
| Q |
119 |
gattatgaattccagaccc------ttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcacc |
212 |
Q |
| |
|
|||| || ||| |||| | ||||||| | |||| | ||||||||| |||| |||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
35376573 |
gattcagatttctagactcatgatcttcgttaccatgcaacaggttttccagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcacc |
35376474 |
T |
|
| Q |
213 |
attataatcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctcct |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| || |
|
|
| T |
35376473 |
attataatcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgcaatgaaactctttgctgct |
35376374 |
T |
|
| Q |
313 |
cc |
314 |
Q |
| |
|
|| |
|
|
| T |
35376373 |
cc |
35376372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 35423932 - 35423631
Alignment:
| Q |
19 |
ttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctga |
118 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||| | |||||||||||| || ||||| ||||||||||||||||||| ||| |
|
|
| T |
35423932 |
ttaacatcacaatgaactacaacttgctctgtatcattgtgaagataatccaatgcatgagctacgtcgagagcaatgtctaacctttgtgtgaaattga |
35423833 |
T |
|
| Q |
119 |
gattatgaattccagaccc------ttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcacc |
212 |
Q |
| |
|
|||| || ||| |||| | ||||||| | |||| | ||||| ||| |||| |||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
35423832 |
gattcagatttctagactcatgatcttcgttaccatgcaacaggttttctagattcccactaggcatgaactcaaaaacaatggccttaaaatcttcacc |
35423733 |
T |
|
| Q |
213 |
attataatcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctcct |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| || |
|
|
| T |
35423732 |
attataatcaacacttgaacagcaagttaggattttcacaagattacggtgcttcatctttcctaaagcattgcattccaccatgaaactctttgctgct |
35423633 |
T |
|
| Q |
313 |
cc |
314 |
Q |
| |
|
|| |
|
|
| T |
35423632 |
cc |
35423631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 165 - 314
Target Start/End: Complemental strand, 35370362 - 35370210
Alignment:
| Q |
165 |
actccccttaggcatgaactcaaaaacaatagccttgaaa-tcttcaccattataatcaacacttgaacaacaagttaggattttgacaagattacggtg |
263 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
35370362 |
actcccattgggcatgaactcaaaaacaatagccttggaactcttcaccattataatcaacacttgagcaacacgttaggattttgacaagattacggtg |
35370263 |
T |
|
| Q |
264 |
cttcatctttcctaaagcattgc--attccgccatgaaactctctgctcctcc |
314 |
Q |
| |
|
| ||||||||||||||||||||| ||||||| |||||||||| |||| |||| |
|
|
| T |
35370262 |
cctcatctttcctaaagcattgcatattccgcaatgaaactctttgctgctcc |
35370210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 163 - 244
Target Start/End: Complemental strand, 35437130 - 35437049
Alignment:
| Q |
163 |
agactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatcaacacttgaacaacaagttagga |
244 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
35437130 |
agactccccataggcatgaattcaaaaactatagccttgaaaacttcaccattataatcaatacttgaacagaaagttagga |
35437049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 29623057 - 29623352
Alignment:
| Q |
19 |
ttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctga |
118 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||||||||||||||||| | ||||||||||||||||||||| ||||||| ||||||||||||| ||| |
|
|
| T |
29623057 |
ttaacatcacagtgaactacagcttgttctatatcattgtgaagataatccaatgcatgagctacatcaagagcaatgtctatcctttgtgtgaggttga |
29623156 |
T |
|
| Q |
119 |
gattatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattata |
218 |
Q |
| |
|
||||||| ||||||| ||||| |||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29623157 |
gattatggcttccagatccttcattatcgtgcaacatcttttctagactcatattaggcatgaactcaaaaacaatagccttgaaatcttcacctttata |
29623256 |
T |
|
| Q |
219 |
atcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactctctgctcctcc |
314 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| || || ||||| || |||||||||| |||| |||| |
|
|
| T |
29623257 |
atcaacacttgaacaacaagttaggatcttgacaagattccggtgtttcatctttcctagagatttacattctgcaatgaaactctttgctgctcc |
29623352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 30663280 - 30662998
Alignment:
| Q |
22 |
acatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagat |
121 |
Q |
| |
|
||||||||||||||||| | | ||| ||| |||||||||||||||| | ||||||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
30663280 |
acatcacagtgaactacaacattctcagtaccattgtgaagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagat |
30663181 |
T |
|
| Q |
122 |
tatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatc |
221 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
30663180 |
tatgaattccagactcttcgttatcgtgcagaagcttttctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatc |
30663081 |
T |
|
| Q |
222 |
aacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactct |
304 |
Q |
| |
|
|| ||||||||||| || || || ||||||||||| ||||||||||||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
30663080 |
tacgcttgaacaacatgtaagaatcttgacaagatttcggtgcttcatctttcccaaagctttgcattcagctgtgaaactct |
30662998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 30671960 - 30671678
Alignment:
| Q |
22 |
acatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagat |
121 |
Q |
| |
|
||||||||||||||||| | | ||| ||| |||||||||||||||| | ||||||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
30671960 |
acatcacagtgaactacaacattctcagtaccattgtgaagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagat |
30671861 |
T |
|
| Q |
122 |
tatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatc |
221 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
30671860 |
tatgaattccagactcttcgttatcgtgcagaagcttttctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatc |
30671761 |
T |
|
| Q |
222 |
aacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactct |
304 |
Q |
| |
|
|| ||||||||||| || || || ||||||||||| ||||||||||||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
30671760 |
tacgcttgaacaacatgtaagaatcttgacaagatttcggtgcttcatctttcccaaagctttgcattcagctgtgaaactct |
30671678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 30626329 - 30626047
Alignment:
| Q |
22 |
acatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctgagat |
121 |
Q |
| |
|
|||||||| |||||||| | | ||| ||| |||||||||||||||| | ||||||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
30626329 |
acatcacattgaactacaacattctcagtaccattgtgaagataatccaatgcatgagctacatcaagagcaatgtcaaccctttgtgtgaggctgagat |
30626230 |
T |
|
| Q |
122 |
tatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattataatc |
221 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
30626229 |
tatgaattccagactcttcgttatcgtgcagaagcttttctagactccccttaggcatgaactcaaaaacaatagccttgaactcgtcacccttataatc |
30626130 |
T |
|
| Q |
222 |
aacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactct |
304 |
Q |
| |
|
| ||||||||||| || || || ||||||||||| ||||||||||||||||| ||||| |||||||| || ||||||||| |
|
|
| T |
30626129 |
tattcttgaacaacatgtaagaatcttgacaagatttcggtgcttcatctttcccaaagctttgcattcagctgtgaaactct |
30626047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 1154007 - 1153787
Alignment:
| Q |
19 |
ttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagctacatcaagagcgatgtctaacctttgtgtgaggctga |
118 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||||||||| |||||||||||||||||| ||||||||| | |||| ||||| |||||| ||| |
|
|
| T |
1154007 |
ttaatatcacagtgaactgtaacttgctttgtatcattgtgaagaaaatcaagtgcatgagctatatcaagagcaaaatctaccctttttgtgagcttga |
1153908 |
T |
|
| Q |
119 |
gattatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcaccattata |
218 |
Q |
| |
|
|||| ||| || |||||||||| |||| |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
1153907 |
gattgtgattttcagacccttcaatatcatgcaacatcttttctagactcccgttaggcatgaactcaaaaacaatagccttgaaatcttcacctttgca |
1153808 |
T |
|
| Q |
219 |
atcaacacttgaacaacaagt |
239 |
Q |
| |
|
||||| |||||| |||||||| |
|
|
| T |
1153807 |
atcaatacttgagcaacaagt |
1153787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 114 - 304
Target Start/End: Complemental strand, 13564796 - 13564606
Alignment:
| Q |
114 |
gctgagattatgaattccagacccttcgttatcgtgcagaatcttttccagactccccttaggcatgaactcaaaaacaatagccttgaaatcttcacca |
213 |
Q |
| |
|
|||||||| |||| || ||| |||||||||| ||||| |||||||| ||||| || |||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
13564796 |
gctgagataatgattttcagttccttcgttattgtgcaacatcttttctagactaccattagacatgaactcaaaaacaatagccttgaaatcgtcaccc |
13564697 |
T |
|
| Q |
214 |
ttataatcaacacttgaacaacaagttaggattttgacaagattacggtgcttcatctttcctaaagcattgcattccgccatgaaactct |
304 |
Q |
| |
|
|||| ||||| ||||||||| ||| || || || ||| |||| ||||||||||||||||||||||| |||||||| ||| | ||||||| |
|
|
| T |
13564696 |
ttattatcaatacttgaacattaaggaagaatcttaacacgatttcggtgcttcatctttcctaaagctttgcattcagccgtaaaactct |
13564606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 13564879 - 13564816
Alignment:
| Q |
19 |
ttaacatcacagtgaactacggcttgctctgtatcattgtgaagataatcaagtgcatgagcta |
82 |
Q |
| |
|
||||||||||| ||| ||| |||||||||| |||||||||||||||||| | ||||| ||||| |
|
|
| T |
13564879 |
ttaacatcacaatgacctaaggcttgctctacatcattgtgaagataatccaatgcataagcta |
13564816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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