View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17864_low_2 (Length: 521)

Name: NF17864_low_2
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17864_low_2
NF17864_low_2
[»] chr3 (23 HSPs)
chr3 (335-505)||(22368187-22368357)
chr3 (335-494)||(22468234-22468393)
chr3 (335-505)||(22630714-22630884)
chr3 (339-505)||(22358277-22358443)
chr3 (351-505)||(22354086-22354242)
chr3 (338-491)||(22635792-22635945)
chr3 (335-471)||(22443048-22443184)
chr3 (335-439)||(22632206-22632310)
chr3 (353-494)||(22431438-22431578)
chr3 (338-505)||(22436909-22437076)
chr3 (353-506)||(22458763-22458916)
chr3 (353-506)||(22481744-22481897)
chr3 (134-181)||(22437914-22437961)
chr3 (10-73)||(22440132-22440195)
chr3 (139-231)||(22439904-22439998)
chr3 (286-339)||(22359155-22359208)
chr3 (286-339)||(22369057-22369110)
chr3 (141-177)||(22449356-22449392)
chr3 (372-471)||(21945682-21945781)
chr3 (339-418)||(22615621-22615700)
chr3 (372-430)||(2818650-2818708)
chr3 (337-471)||(21937176-21937310)
chr3 (369-430)||(2797451-2797512)
[»] chr8 (1 HSPs)
chr8 (372-420)||(27294606-27294654)
[»] chr1 (1 HSPs)
chr1 (369-469)||(34980217-34980317)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 335 - 505
Target Start/End: Complemental strand, 22368357 - 22368187
Alignment:
Q  335 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 434  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  22368357 agagggaagagcacaccgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaaggtcgtt 22368258  T
Q  435 aaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacat 505  Q
    ||||| ||||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22368257 aaacactttgattgtcgtttatggatcacggtttctcgaccatataataaagaaaaattgctgaaggacat 22368187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 335 - 494
Target Start/End: Complemental strand, 22468393 - 22468234
Alignment:
Q  335 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 434  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||    
T  22468393 agagggaagagcagagcgcaccgttgtctccatagttggaatgggaggactgggaaaaaccactatagccaagaaagtttttgacaaccaaaaggtcgtt 22468294  T
Q  435 aaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattg 494  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  22468293 aaacattttgattgtcatgtatggatcacggtgtctcgaccatacaatatagaaaaattg 22468234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 335 - 505
Target Start/End: Complemental strand, 22630884 - 22630714
Alignment:
Q  335 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 434  Q
    ||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||| ||||||||||    
T  22630884 agagggaagagcagaacgcacagttgtctctattgttggaatgggaggactggggaaaaccactcttgccaagaaaatttttgacaaccgaaaggtcgtt 22630785  T
Q  435 aaacattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacat 505  Q
    ||||| ||||| ||||||| |||||||||||||||||||||||| |||| ||||| |||| ||| ||||||    
T  22630784 aaacactttgattgtcatgaatggatcacggtgtctcgaccatacaatatagaaacattgttgagggacat 22630714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 339 - 505
Target Start/End: Complemental strand, 22358443 - 22358277
Alignment:
Q  339 ggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaac 438  Q
    ||||||||| | || ||| |||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||| ||||    
T  22358443 ggaagagcagaccggacaattgtctccattgttggaatgggaggactgggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaac 22358344  T
Q  439 attttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacat 505  Q
    | |||||  ||| ||||||||| ||||||||||||||||| |||| ||||||| || ||| ||||||    
T  22358343 actttgatcgtcgtgtatggattacggtgtctcgaccatacaatacagaaaaagtgttgagggacat 22358277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 351 - 505
Target Start/End: Complemental strand, 22354242 - 22354086
Alignment:
Q  351 cgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtc 450  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  ||||||||||||||||||||||| |||||  | ||||| |||     
T  22354242 cgcacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccagaaaagtttttgacaaccaaaaggtagttaagaactttgattgtt 22354143  T
Q  451 atg--tatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacat 505  Q
    |||  ||||||||||||| ||||||||||| || | ||||||| || ||| ||||||    
T  22354142 atgtatatggatcacggtatctcgaccatacaacatagaaaaagtgttgagggacat 22354086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 338 - 491
Target Start/End: Complemental strand, 22635945 - 22635792
Alignment:
Q  338 gggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaa 437  Q
    |||||||||| | || ||| ||||||||||  |||||||||||||||  ||||||| |||||| || ||||||||||||||||||| ||||||||| |||    
T  22635945 gggaagagcagaccggacaattgtctccatctttggaatgggaggacaaggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaa 22635846  T
Q  438 cattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaa 491  Q
     | ||||| |||| ||||||||| ||||||||||||||||| |||| |||||||    
T  22635845 tactttgattgtcgtgtatggattacggtgtctcgaccatacaatacagaaaaa 22635792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 335 - 471
Target Start/End: Complemental strand, 22443184 - 22443048
Alignment:
Q  335 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 434  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||   || ||||||||||||||||||| |||    
T  22443184 agagggaagagaagaccgcacagttgtctccattgttggaatgggaggattgggaaaaaccactctagccagacaaatttttgacaaccaaaaggtagtt 22443085  T
Q  435 aaacattttgactgtcatgtatggatcacggtgtctc 471  Q
    || || |||||||||| | ||||||||| ||||||||    
T  22443084 aagcactttgactgtcttttatggatcatggtgtctc 22443048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 335 - 439
Target Start/End: Complemental strand, 22632310 - 22632206
Alignment:
Q  335 agagggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgtt 434  Q
    ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| |||||    
T  22632310 agagggaagagcagatcgcacagttgtctccattattggaatgggaggactggggaaaaccactctagccaagaaagtttttgacaaccgaaagatcgtt 22632211  T
Q  435 aaaca 439  Q
    |||||    
T  22632210 aaaca 22632206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 353 - 494
Target Start/End: Complemental strand, 22431578 - 22431438
Alignment:
Q  353 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcat 452  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||||  |||||||||||||||||||| | | |||| ||||||| ||||| |||| |    
T  22431578 cacagtggtctccattgt-ggaatgggaggactgggaaaaaccactctaaccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgt 22431480  T
Q  453 gtatggatcacggtgtctcgaccatataataaagaaaaattg 494  Q
     |||||||||| ||||||| ||||||| ||| ||||||||||    
T  22431479 ttatggatcacagtgtctcaaccatatgatatagaaaaattg 22431438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 505
Target Start/End: Complemental strand, 22437076 - 22436909
Alignment:
Q  338 gggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaa 437  Q
    |||||||| | ||||  |||||||||| ||||| ||||||||||| |  |||||||  ||||| ||||||||||||||||| |||   || ||| | |||    
T  22437076 gggaagagtagagcgtgcagttgtctctattgtaggaatgggagggcaaggaaaaactactctggccaagaaagtttttgagaacatcaaagtcttaaaa 22436977  T
Q  438 cattttgactgtcatgtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacat 505  Q
    || ||||||||||||||||||||||| ||||||| | |||| | ||||||||||||| ||| ||||||    
T  22436976 caatttgactgtcatgtatggatcacagtgtctcaatcatacagtaaagaaaaattgttgagggacat 22436909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 353 - 506
Target Start/End: Complemental strand, 22458916 - 22458763
Alignment:
Q  353 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcat 452  Q
    |||| ||||| |||||||||||| ||||||||  |||||||  |||||||| ||||| ||||||||| || | ||| |||||||||| ||||| ||||||    
T  22458916 cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcat 22458817  T
Q  453 gtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacatg 506  Q
    ||||||||||  ||||||| | |||| |||| ||||   ||||||| |||||||    
T  22458816 gtatggatcagagtgtctcaatcatacaatatagaaggcttgctgagggacatg 22458763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 353 - 506
Target Start/End: Complemental strand, 22481897 - 22481744
Alignment:
Q  353 cacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcat 452  Q
    |||| ||||| |||||||||||| ||||||||  |||||||  |||||||| ||||| ||||||||| || | ||| |||||||||| ||||| ||||||    
T  22481897 cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcat 22481798  T
Q  453 gtatggatcacggtgtctcgaccatataataaagaaaaattgctgaaggacatg 506  Q
    ||||||||||  ||||||| | |||| |||| ||||   ||||||| |||||||    
T  22481797 gtatggatcagagtgtctcaatcatacaatatagaaggcttgctgagggacatg 22481744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 181
Target Start/End: Complemental strand, 22437961 - 22437914
Alignment:
Q  134 acacttcacattgcatagccaattgcccattcaaagctaaattattta 181  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  22437961 acacctcacattgcatagccaattgcccattcaaaactaaattattta 22437914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 22440195 - 22440132
Alignment:
Q  10 atatgaattagtaaaagctaatcctacaaaaataattaaagaacgaccatggaaattaagaaag 73  Q
    |||||||||| ||||| |||| | || |||||||||||||||||||||||||||||||| ||||    
T  22440195 atatgaattaataaaatctaaccttaaaaaaataattaaagaacgaccatggaaattaacaaag 22440132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 22439998 - 22439904
Alignment:
Q  139 tcacattgcatagccaattgcccattcaaagc-----taaattatttaactagttagatgaatgatctgaagagctgggtatcttatctattccgaat 231  Q
    |||||||||||||||||||| | ||||||| |     ||||||||||||||||| ||||||||||||  ||||||| ||| |||||||||||||||||    
T  22439998 tcacattgcatagccaattggcgattcaaaactaatttaaattatttaactagtgagatgaatgatc--aagagct-ggtgtcttatctattccgaat 22439904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 22359208 - 22359155
Alignment:
Q  286 ttgatttttatgctgtcaaggtactcaataaaatatttaacaatgacagagagg 339  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  22359208 ttgatatttatgctgtcaagttactcaataaaatatttgacaatgatagagagg 22359155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 339
Target Start/End: Complemental strand, 22369110 - 22369057
Alignment:
Q  286 ttgatttttatgctgtcaaggtactcaataaaatatttaacaatgacagagagg 339  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  22369110 ttgatatttatgctgtcaagttactcaataaaatatttgacaatgatagagagg 22369057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 22449356 - 22449392
Alignment:
Q  141 acattgcatagccaattgcccattcaaagctaaatta 177  Q
    |||||||||||||||||||||||||||| ||||||||    
T  22449356 acattgcatagccaattgcccattcaaaactaaatta 22449392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 471
Target Start/End: Original strand, 21945682 - 21945781
Alignment:
Q  372 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgtctc 471  Q
    ||||||||||| |  ||||||| |||||| ||||||||||||||||||| | |  | ||| ||  ||| ||||| |||| |||||||||||| |||||||    
T  21945682 ggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagcaaggatgtcatttgacactttgattgtcttgtatggatcactgtgtctc 21945781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 418
Target Start/End: Complemental strand, 22615700 - 22615621
Alignment:
Q  339 ggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttga 418  Q
    ||||||| | ||||||| ||||||||  | || ||||||||||| | ||| |||| ||||||||||||||| ||||||||    
T  22615700 ggaagagtagagcgcactgttgtctctgtggtgggaatgggagggcagggtaaaaccactcttgccaagaatgtttttga 22615621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 2818650 - 2818708
Alignment:
Q  372 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggt 430  Q
    |||||||| || || ||||||| |||||||||||||  ||||||||||| |||||||||    
T  2818650 ggaatggggggtctaggaaaaaccactcttgccaagctagtttttgacagccaaaaggt 2818708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 471
Target Start/End: Original strand, 21937176 - 21937310
Alignment:
Q  337 agggaagagcacagcgcacagttgtctccattgttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaa 436  Q
    ||||||| ||| ||||||| ||||| ||  | || ||||||||||| |  ||||||| |||||| || ||||||| |||||||| | |  | ||||||      
T  21937176 agggaagggcagagcgcactgttgtttctgtggtaggaatgggagggcaaggaaaaaccactctagctaagaaagcttttgacagcaaggatgtcgttgg 21937275  T
Q  437 acattttgactgtcatgtatggatcacggtgtctc 471  Q
    ||| ||||| |||| |||||||||||| |||||||    
T  21937276 acactttgattgtcgtgtatggatcacagtgtctc 21937310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 2797451 - 2797512
Alignment:
Q  369 gttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggt 430  Q
    |||||||||||||| || ||||||| |||||||||||||  |||||| ||||  ||||||||    
T  2797451 gttggaatgggaggtctaggaaaaaccactcttgccaagctagttttcgacagtcaaaaggt 2797512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 420
Target Start/End: Original strand, 27294606 - 27294654
Alignment:
Q  372 ggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgaca 420  Q
    |||||||||||||  ||||||| |||||| | |||||||||||||||||    
T  27294606 ggaatgggaggacaaggaaaaaccactctagtcaagaaagtttttgaca 27294654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 469
Target Start/End: Original strand, 34980217 - 34980317
Alignment:
Q  369 gttggaatgggaggactgggaaaaatcactcttgccaagaaagtttttgacaaccaaaaggtcgttaaacattttgactgtcatgtatggatcacggtgt 468  Q
    |||||||||||||| |  |||||||| |||||||| || ||||||||||| | | || |||| ||   ||| ||||| |||| |||||||||||| ||||    
T  34980217 gttggaatgggagggcaaggaaaaataactcttgctaaaaaagtttttgatagcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgt 34980316  T
Q  469 c 469  Q
    |    
T  34980317 c 34980317  T

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