View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17864_low_20 (Length: 301)
Name: NF17864_low_20
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_low_20 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 31527067 - 31526785
Alignment:
| Q |
1 |
ttgtcagatgcaacattttatgcgcgcaagcaagcagccgaaacggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31527067 |
ttgtcagatgcaacattttatgcgcgcaagcaagcagccgaagcggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctc |
31526968 |
T |
|
| Q |
101 |
aaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31526967 |
aaggagtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggc |
31526868 |
T |
|
| Q |
201 |
taagattaatgctgaggcggtacgcggacttgaacctaagattagtatttggactaatggaggtgacaatggaggcgaaggtt |
283 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31526867 |
taagattaatgctgaggcggtacgtggacttgaacctaagattagtatttggactaatggaggtgacaatggaggcgaaggtt |
31526785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 5 - 277
Target Start/End: Complemental strand, 51823953 - 51823681
Alignment:
| Q |
5 |
cagatgcaacattttatgcgcgcaagcaagcagccgaaacggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaagg |
104 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| | || ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
51823953 |
cagatgcaacattttatgcgtgcaagcaagcagctgaagcagatctatacgcaaagaaaaaagaggcagaggggattgtgacacttggaaatgctcaagg |
51823854 |
T |
|
| Q |
105 |
agtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaag |
204 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51823853 |
agcgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaag |
51823754 |
T |
|
| Q |
205 |
attaatgctgaggcggtacgcggacttgaacctaagattagtatttggactaatggaggtgacaatggaggcg |
277 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
51823753 |
attaatgctgaggcagtacgtggacttgaacctaagattagtatttggactaatggaggggacaatggaggcg |
51823681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 263
Target Start/End: Original strand, 32593338 - 32593596
Alignment:
| Q |
5 |
cagatgcaacattttatgcgcgcaagcaagcagccgaaacggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaagg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
32593338 |
cagatgcaacattttatgcgcgcaagcaagcagctgaagcagagctatacgcaaagaaaaaagaggcagaagggattgtgacacttgggaatgctcaagg |
32593437 |
T |
|
| Q |
105 |
agtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaag |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32593438 |
agtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaag |
32593537 |
T |
|
| Q |
205 |
attaatgctgaggcggtacgcggacttgaacctaagattagtatttggactaatggagg |
263 |
Q |
| |
|
|| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32593538 |
atcaatgctgaggcagtacatggacttgaacctaagattagtatttggactaatggagg |
32593596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 37030402 - 37030141
Alignment:
| Q |
5 |
cagatgcaacattttatgcgcgcaagcaagcagccgaaacggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaagg |
104 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||| | ||||| |||||||||||||| ||||||||||| ||||||||| |||| | |||||||| |
|
|
| T |
37030402 |
cagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagggaattgtgacagttggacaagctcaagg |
37030303 |
T |
|
| Q |
105 |
agtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaag |
204 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37030302 |
ggtgtatgtaagtaaacttcttaatgcacttggaaacgactacacagctgtgagggattacttgatgataaatggtggcatgtttcaagagattgctaag |
37030203 |
T |
|
| Q |
205 |
attaatgctgaggcggtacgcggacttgaacctaagattagtatttggactaatggaggtga |
266 |
Q |
| |
|
||||| || ||||| |||| |||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
37030202 |
attaacgccgaggcaatacgaggacttgagcctaagattagtatttggactaatgggggtga |
37030141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 260
Target Start/End: Complemental strand, 49202236 - 49201981
Alignment:
| Q |
5 |
cagatgcaacattttatgcgcgcaagcaagcagccgaaacggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaagg |
104 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49202236 |
cagatgcaacattttatgcttgcaagcaagaagccgaagcagagctatacgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaagg |
49202137 |
T |
|
| Q |
105 |
agtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaag |
204 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49202136 |
agcgtatgtaagtacacttctgaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggtggcatgtttcaagagattgctaag |
49202037 |
T |
|
| Q |
205 |
attaatgctgaggcggtacgcggacttgaacctaagattagtatttggactaatgg |
260 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49202036 |
attaatgccgaggcagtacgcggacttgagcctaagattagtatttggactaatgg |
49201981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 49207183 - 49206930
Alignment:
| Q |
13 |
acattttatgcgcgcaagcaagcagccgaaacggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaaggagtgtatg |
112 |
Q |
| |
|
||||||||||| |||||||||| ||| ||| | |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
49207183 |
acattttatgctcgcaagcaagaagctgaagcagagctatacgcaaagaaaaaagaggcagaggggattatgacacttgggaatgctcaaggagcgtatg |
49207084 |
T |
|
| Q |
113 |
taagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaagattaatgc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49207083 |
taagtacacttctcaatgcacttggaaacaactacacagctgtaagggattacttgatgataaatggtggcatgtttcaagagattgctaagattaatgc |
49206984 |
T |
|
| Q |
213 |
tgaggcggtacgcggacttgaacctaagattagtatttggactaatggaggtga |
266 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
49206983 |
cgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtga |
49206930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 266
Target Start/End: Complemental strand, 49211757 - 49211504
Alignment:
| Q |
13 |
acattttatgcgcgcaagcaagcagccgaaacggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaaggagtgtatg |
112 |
Q |
| |
|
||||||||||| |||||||||| ||| ||| | ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
49211757 |
acattttatgctcgcaagcaagaagctgaagcagagctgtacgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaaggagcgtatg |
49211658 |
T |
|
| Q |
113 |
taagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaagattaatgc |
212 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49211657 |
taagtacacttctgaatgcacttggaaacaactatacagcagtaagggattacttgatgataaatggtggcatgtttcaagagattgctaagattaatgc |
49211558 |
T |
|
| Q |
213 |
tgaggcggtacgcggacttgaacctaagattagtatttggactaatggaggtga |
266 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
49211557 |
tgaggcggtacgcggacttgagcctaagattagtatttggactaatggtggtga |
49211504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 49190947 - 49190686
Alignment:
| Q |
5 |
cagatgcaacattttatgcgcgcaagcaagcagccgaaacggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaagg |
104 |
Q |
| |
|
|||| |||||||||||||| |||| ||||||||| ||| | |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49190947 |
cagacgcaacattttatgctcgcacgcaagcagctgaagcagagctatatgcaaagaaaaaggaggcagagggaattgtgacacttgggaatgctcaagg |
49190848 |
T |
|
| Q |
105 |
agtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaag |
204 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49190847 |
ggtgtatctaagtgcacttctcaatgcacttggaaacaactacactgctgtaagggatttcttgatgataaatggtggcatgtttcaagagatcgctaag |
49190748 |
T |
|
| Q |
205 |
attaatgctgaggcggtacgcggacttgaacctaagattagtatttggactaatggaggtga |
266 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
49190747 |
attaatgctgaggcagtacgcggacttgagcctaagattagtatttggactaatggtggtga |
49190686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 5 - 266
Target Start/End: Complemental strand, 49187256 - 49186995
Alignment:
| Q |
5 |
cagatgcaacattttatgcgcgcaagcaagcagccgaaacggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaagg |
104 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| ||| | ||||| |||||||||||||| ||||||||||| |||||||||||||| | |||||||| |
|
|
| T |
49187256 |
cagatgcaacattttatgctagcaaacaagcagctgaagcagagctttatgcaaagaaaaaggaggcagagggaattgtgacacttggacaagctcaagg |
49187157 |
T |
|
| Q |
105 |
agtgtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaag |
204 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
49187156 |
agcgtatgtaagtacacttctcaatgcacttggaaacgactacacagctgtaagggattacttgatgataaatggtgacatgtttcaagagattgctaag |
49187057 |
T |
|
| Q |
205 |
attaatgctgaggcggtacgcggacttgaacctaagattagtatttggactaatggaggtga |
266 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
49187056 |
attaatgccgaggcaatacgcggacttgagcctaagattagtatttggactaatggtggtga |
49186995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 26756231 - 26755979
Alignment:
| Q |
8 |
atgcaacattttatgcgcgcaagcaagcagccgaaacggagctatatgcaaagaaaaaagaggcagaggggattgtgacacttgggaatgctcaaggagt |
107 |
Q |
| |
|
|||||||||||||||| || || |||||||||||| | ||||||||||||||||| || ||||| |||||||| |||||||||||||||| |||||| || |
|
|
| T |
26756231 |
atgcaacattttatgctcgtaaacaagcagccgaagcagagctatatgcaaagaagaaggaggcggaggggatcgtgacacttgggaatggtcaaggggt |
26756132 |
T |
|
| Q |
108 |
gtatgtaagtacacttctcaatgcacttggaaacgactacacagctctaagggattacttgatgataaatggtggcatgtttcaagagatggctaagatt |
207 |
Q |
| |
|
|| ||||||||| |||||||| ||||||||| || || |||||| ||||||| |||||||||||||||||||||||||||| ||| || || |||||| |
|
|
| T |
26756131 |
gtgtgtaagtacccttctcaacgcacttggaggtgattatacagctgtaagggactacttgatgataaatggtggcatgtttcgagatattgcgaagatt |
26756032 |
T |
|
| Q |
208 |
aatgctgaggcggtacgcggacttgaacctaagattagtatttggactaatgg |
260 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26756031 |
aatgctgaggctatacgcggacttgaacctaagattagtatttggactaatgg |
26755979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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