View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17864_low_24 (Length: 236)
Name: NF17864_low_24
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 10601556 - 10601348
Alignment:
| Q |
18 |
aggtcctgcctatcagatcattaagggacaatcatcaaaccaacatgaaagtggaaccacagaaccaactgaacaaaactttgtgcttggaactataatg |
117 |
Q |
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| T |
10601556 |
aggtcctgcctttcagatcattaagggacaatcatcaaaccaacatgaaagtggaaccactgagccaactgaacaaaactttgtgcttggcactataatg |
10601457 |
T |
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| Q |
118 |
ctcatttctagttgtggtggttgggctagtttctttatcttacaagtacgtataataattaatcactaaccataccctaacactttatttatattcaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10601456 |
ctcatttctagttgtggtggttgggctagtttctttatcttacaagtacgtataataattaatcactaaccataccctaacactttatttatattcaaat |
10601357 |
T |
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| Q |
218 |
attttcttc |
226 |
Q |
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||||||||| |
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| T |
10601356 |
attttcttc |
10601348 |
T |
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