View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17864_low_28 (Length: 213)

Name: NF17864_low_28
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17864_low_28
NF17864_low_28
[»] chr4 (17 HSPs)
chr4 (1-127)||(15703764-15703892)
chr4 (1-53)||(42597281-42597333)
chr4 (1-47)||(37838558-37838604)
chr4 (59-136)||(15703749-15703826)
chr4 (22-137)||(15703755-15703872)
chr4 (1-45)||(11150623-11150667)
chr4 (11-118)||(42597244-42597353)
chr4 (60-137)||(23973129-23973206)
chr4 (1-45)||(42597244-42597288)
chr4 (2-53)||(18875374-18875425)
chr4 (1-40)||(25127107-25127146)
chr4 (60-118)||(11150609-11150667)
chr4 (3-53)||(25127139-25127189)
chr4 (1-54)||(23973143-23973196)
chr4 (2-54)||(19612718-19612770)
chr4 (1-45)||(19612772-19612816)
chr4 (59-111)||(25127109-25127161)
[»] chr2 (14 HSPs)
chr2 (1-53)||(37379702-37379754)
chr2 (40-119)||(20264501-20264582)
chr2 (1-57)||(27401559-27401617)
chr2 (3-53)||(20264539-20264589)
chr2 (11-118)||(37379682-37379791)
chr2 (11-111)||(16092561-16092664)
chr2 (1-46)||(16092627-16092672)
chr2 (72-134)||(27401555-27401619)
chr2 (1-45)||(37379747-37379791)
chr2 (76-119)||(20264546-20264589)
chr2 (1-47)||(20264500-20264546)
chr2 (60-126)||(38991874-38991940)
chr2 (22-103)||(16092618-16092701)
chr2 (1-53)||(38991888-38991940)
[»] chr5 (5 HSPs)
chr5 (1-119)||(29496788-29496908)
chr5 (1-119)||(29496833-29496953)
chr5 (11-118)||(29496744-29496853)
chr5 (1-53)||(29496781-29496833)
chr5 (1-45)||(29496744-29496788)
[»] scaffold0281 (6 HSPs)
scaffold0281 (1-48)||(921-968)
scaffold0281 (1-53)||(966-1018)
scaffold0281 (5-104)||(940-1041)
scaffold0281 (1-53)||(876-928)
scaffold0281 (60-119)||(862-921)
scaffold0281 (5-119)||(895-1011)
[»] chr8 (11 HSPs)
chr8 (1-113)||(12577123-12577237)
chr8 (1-46)||(42145648-42145693)
chr8 (60-127)||(9882578-9882646)
chr8 (72-119)||(42145646-42145693)
chr8 (1-54)||(9882592-9882646)
chr8 (40-111)||(40387791-40387864)
chr8 (1-39)||(40387827-40387865)
chr8 (13-57)||(9882513-9882557)
chr8 (5-53)||(40387786-40387834)
chr8 (91-131)||(9882518-9882558)
chr8 (9-53)||(17289887-17289931)
[»] chr3 (13 HSPs)
chr3 (11-118)||(52466225-52466334)
chr3 (60-128)||(3472710-3472778)
chr3 (2-48)||(15778162-15778208)
chr3 (1-45)||(52466225-52466269)
chr3 (1-53)||(52466262-52466314)
chr3 (1-55)||(3472710-3472764)
chr3 (24-130)||(15778108-15778216)
chr3 (1-30)||(3586266-3586295)
chr3 (1-46)||(5842130-5842175)
chr3 (1-45)||(39728066-39728111)
chr3 (1-57)||(3475976-3476032)
chr3 (1-45)||(18539050-18539094)
chr3 (1-53)||(18539087-18539139)
[»] scaffold0498 (2 HSPs)
scaffold0498 (1-53)||(10000-10052)
scaffold0498 (65-119)||(9991-10045)
[»] chr7 (9 HSPs)
chr7 (1-53)||(11509598-11509650)
chr7 (11-119)||(11509560-11509670)
chr7 (3-45)||(18148595-18148637)
chr7 (1-48)||(11509558-11509605)
chr7 (13-57)||(34706041-34706085)
chr7 (2-53)||(34706150-34706201)
chr7 (91-137)||(34706046-34706092)
chr7 (1-45)||(11391785-11391829)
chr7 (1-57)||(34706059-34706115)
[»] chr6 (9 HSPs)
chr6 (1-53)||(19891960-19892012)
chr6 (1-53)||(9547918-9547970)
chr6 (1-45)||(19770015-19770059)
chr6 (61-127)||(27572946-27573013)
chr6 (1-54)||(27572946-27573000)
chr6 (5-103)||(3851890-3851990)
chr6 (72-119)||(19891958-19892005)
chr6 (1-46)||(28708823-28708868)
chr6 (12-48)||(22469043-22469079)
[»] scaffold0024 (2 HSPs)
scaffold0024 (1-48)||(109067-109114)
scaffold0024 (7-48)||(106963-107004)
[»] chr1 (16 HSPs)
chr1 (1-53)||(9132282-9132334)
chr1 (1-53)||(9132327-9132379)
chr1 (22-119)||(9132334-9132433)
chr1 (2-58)||(9132367-9132423)
chr1 (1-53)||(23633046-23633098)
chr1 (60-119)||(23633053-23633112)
chr1 (5-58)||(90265-90318)
chr1 (1-57)||(23633163-23633219)
chr1 (75-119)||(41137857-41137901)
chr1 (1-57)||(52272980-52273036)
chr1 (11-119)||(9132289-9132399)
chr1 (2-53)||(41137850-41137901)
chr1 (11-110)||(41137821-41137922)
chr1 (1-45)||(12785297-12785342)
chr1 (12-85)||(23633042-23633117)
chr1 (1-53)||(52272950-52273002)
[»] scaffold0679 (1 HSPs)
scaffold0679 (1-46)||(2335-2380)
[»] scaffold0139 (1 HSPs)
scaffold0139 (1-30)||(22688-22717)


Alignment Details
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 15703764 - 15703892
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaatagcac--ttttatatagcaaatctttaaatcacaaatattcaaatag 98  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||   || | ||| || ||||||||||||||||| ||||||||     
T  15703764 ctttaaatcacacatcttcaaatagcacatctttatataacacatcttcaaataacacatcttcaaataacacatctttaaatcacaaatcttcaaataa 15703863  T
Q  99 cacatctttatatcacacatcgtcaaata 127  Q
    ||||||||| |||  |||||| |||||||    
T  15703864 cacatctttgtataccacatcttcaaata 15703892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 42597333 - 42597281
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42597333 ctttaaatcacacatcttcaaataacacatatttatataacacatctttaaat 42597281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 37838604 - 37838558
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatct 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  37838604 ctttaaatcacacatcttcaaataacacatatttatataacacatct 37838558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 15703749 - 15703826
Alignment:
Q  59 ttttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatatcacacatcgtcaaatagcatatctt 136  Q
    ||||||||| || |||||||||||||| || |||||||||||||||||||||| ||||||| ||||||| || |||||    
T  15703749 ttttatataacacatctttaaatcacacatcttcaaatagcacatctttatataacacatcttcaaataacacatctt 15703826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 15703755 - 15703872
Alignment:
Q  22 ataacacatatttatataacacatcttcaaatagcac--ttttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatatcacacatc 119  Q
    ||||||||| |||| || |||||||||||||||||||   |||||||| || ||||| |||| ||| || |||||||| |||||||||| |||||| |||    
T  15703755 ataacacatctttaaatcacacatcttcaaatagcacatctttatataacacatcttcaaataacacatcttcaaataacacatctttaaatcacaaatc 15703854  T
Q  120 gtcaaatagcatatcttt 137  Q
     ||||||| || ||||||    
T  15703855 ttcaaataacacatcttt 15703872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11150623 - 11150667
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacat 45  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  11150623 ctttaaatcacacatcttcaaataacacatttttatataacacat 11150667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 42597353 - 42597244
Alignment:
Q  11 cacatcttcaaataacacatatttatataacacatcttcaaatagcactt--ttatatagcaaatctttaaatcacaaatattcaaatagcacatcttta 108  Q
    |||||||| ||||||||| | |||| || ||||||||||||||| ||| |  ||||||| || |||||||||||| | || ||||||||| |||| ||||    
T  42597353 cacatctttaaataacacgtctttaaatcacacatcttcaaataacacatatttatataacacatctttaaatcatacatcttcaaatagtacatattta 42597254  T
Q  109 tatcacacat 118  Q
    ||| ||||||    
T  42597253 tataacacat 42597244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 23973129 - 23973206
Alignment:
Q  60 tttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatatcacacatcgtcaaatagcatatcttt 137  Q
    |||||||| || |||||||||||||| |  ||||||||||||||| |||||| | ||||| ||||||| || ||||||    
T  23973129 tttatataacacatctttaaatcacacaatttcaaatagcacatcattatataatacatcttcaaataacacatcttt 23973206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42597288 - 42597244
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacat 45  Q
    |||||||||| |||||||||||||  |||||||||||||||||||    
T  42597288 ctttaaatcatacatcttcaaatagtacatatttatataacacat 42597244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 18875374 - 18875425
Alignment:
Q  2 tttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    ||||||||||||||| | | ||||||||| ||||||||||||||| ||||||    
T  18875374 tttaaatcacacatccttatataacacatctttatataacacatcgtcaaat 18875425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25127146 - 25127107
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataa 40  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  25127146 ctttaaatcacacatcttcaaataatacatctttatataa 25127107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 11150609 - 11150667
Alignment:
Q  60 tttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatatcacacat 118  Q
    |||||||| || |||||||||||||| || |||||||| ||||| ||||||| ||||||    
T  11150609 tttatataacacatctttaaatcacacatcttcaaataacacatttttatataacacat 11150667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 25127189 - 25127139
Alignment:
Q  3 ttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    ||||||||||||| | ||||||||| || ||||||||||||||||| ||||    
T  25127189 ttaaatcacacatttccaaataacatatttttatataacacatctttaaat 25127139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23973143 - 23973196
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaata 54  Q
    ||||||||||||||  |||||||| |||||  |||||||| |||||||||||||    
T  23973143 ctttaaatcacacaatttcaaatagcacatcattatataatacatcttcaaata 23973196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 19612770 - 19612718
Alignment:
Q  2 tttaaatcacacatcttcaaataacacatatttatataacacatcttcaaata 54  Q
    ||||||||| ||||||||||||||||||| |||| || ||| | |||||||||    
T  19612770 tttaaatcagacatcttcaaataacacatctttaaattacaaaacttcaaata 19612718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19612816 - 19612772
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacat 45  Q
    |||||||||| |||||| |||||| ||||| ||||||||||||||    
T  19612816 ctttaaatcatacatctacaaatatcacatctttatataacacat 19612772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 25127161 - 25127109
Alignment:
Q  59 ttttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatat 111  Q
    ||||||||| || |||||||||||||| || ||||||||  ||||||||||||    
T  25127161 ttttatataacacatctttaaatcacacatcttcaaataatacatctttatat 25127109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37379702 - 37379754
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37379702 ctttaaatcacacatcttcaaataacacatatttatataacacatctttaaat 37379754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 20264582 - 20264501
Alignment:
Q  40 acacatcttcaaatagcactt--ttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatatcacacatc 119  Q
    ||||||||||||||||||| |  ||||||| || |||||||||||| ||||||||||||| ||||||||||||| |||||||    
T  20264582 acacatcttcaaatagcacatctttatataacacatctttaaatcataaatattcaaataacacatctttatataacacatc 20264501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27401617 - 27401559
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacac--atcttcaaatagca 57  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||    
T  27401617 ctttaaatcacacatcttcaaataacacatatttatataacacgtatcgtcaaatagca 27401559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 20264589 - 20264539
Alignment:
Q  3 ttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  20264589 ttaaatcacacatcttcaaatagcacatctttatataacacatctttaaat 20264539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 37379682 - 37379791
Alignment:
Q  11 cacatcttcaaataacacatatttatataacacatcttcaaatagcactt--ttatatagcaaatctttaaatcacaaatattcaaatagcacatcttta 108  Q
    |||||||| ||||||||| | |||| || ||||||||||||||| ||| |  ||||||| || |||||||||||| | || ||||||||| |||| ||||    
T  37379682 cacatctttaaataacacgtctttaaatcacacatcttcaaataacacatatttatataacacatctttaaatcatacatcttcaaatagtacatattta 37379781  T
Q  109 tatcacacat 118  Q
    ||| ||||||    
T  37379782 tataacacat 37379791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 16092561 - 16092664
Alignment:
Q  11 cacatcttcaaataacacatatttatataacacatcttcaaa-tagcac--ttttatatagcaaatctttaaatcacaaatattcaaatagcacatcttt 107  Q
    |||||||| | ||||||||| ||||||| ||||||| ||||| || |||  ||||||||| || |||||||||||| | || |||||||| |||||||||    
T  16092561 cacatctttagataacacatctttatatgacacatcatcaaaatatcacatttttatataacacatctttaaatcaaacatcttcaaataacacatcttt 16092660  T
Q  108 atat 111  Q
    ||||    
T  16092661 atat 16092664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16092627 - 16092672
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatc 46  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||    
T  16092627 ctttaaatcaaacatcttcaaataacacatctttatatagcacatc 16092672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 27401619 - 27401555
Alignment:
Q  72 atctttaaatcacaaatattcaaatagcacatctttatatcacac--atcgtcaaatagcatatc 134  Q
    |||||||||||||| || |||||||| ||||| ||||||| ||||  ||||||||||||||||||    
T  27401619 atctttaaatcacacatcttcaaataacacatatttatataacacgtatcgtcaaatagcatatc 27401555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37379747 - 37379791
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacat 45  Q
    |||||||||| |||||||||||||  |||||||||||||||||||    
T  37379747 ctttaaatcatacatcttcaaatagtacatatttatataacacat 37379791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 20264589 - 20264546
Alignment:
Q  76 ttaaatcacaaatattcaaatagcacatctttatatcacacatc 119  Q
    |||||||||| || |||||||||||||||||||||| |||||||    
T  20264589 ttaaatcacacatcttcaaatagcacatctttatataacacatc 20264546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20264546 - 20264500
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatct 47  Q
    |||||||||| | || |||||||||||||| ||||||||||||||||    
T  20264546 ctttaaatcataaatattcaaataacacatctttatataacacatct 20264500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 38991874 - 38991940
Alignment:
Q  60 tttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatatcacacatcgtcaaat 126  Q
    ||||||||| |||||||||||||||| || || | ||| |||||||||| ||||||| || ||||||    
T  38991874 tttatatagaaaatctttaaatcacacatctttatataacacatctttaaatcacacttcttcaaat 38991940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 16092618 - 16092701
Alignment:
Q  22 ataacacatatttatataacacatcttcaaatagcactt--ttatatagcaaatctttaaatcacaaatattcaaatagcacat 103  Q
    ||||||||| |||| || | ||||||||||||| ||| |  |||||||||| ||| |||||||||| || |||||||| |||||    
T  16092618 ataacacatctttaaatcaaacatcttcaaataacacatctttatatagcacatcattaaatcacacatcttcaaatatcacat 16092701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38991888 - 38991940
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    |||||||||||||||||| | ||||||||| |||| || |||| |||||||||    
T  38991888 ctttaaatcacacatctttatataacacatctttaaatcacacttcttcaaat 38991940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 29496908 - 29496788
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaatagcactt--ttatatagcaaatctttaaatcacaaatattcaaatag 98  Q
    |||||||| |||||| || | ||||||||| |||| || ||||| ||||||||||||| |  ||||||| || |||||||||||||| |  |||||||||    
T  29496908 ctttaaataacacatatttatataacacatctttaaatcacacaacttcaaatagcacatctttatataacacatctttaaatcacacaacttcaaatag 29496809  T
Q  99 cacatctttatatcacacatc 119  Q
    ||||| ||||||| |||||||    
T  29496808 cacatgtttatataacacatc 29496788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 29496953 - 29496833
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaatagcactt--ttatatagcaaatctttaaatcacaaatattcaaatag 98  Q
    ||||| || ||||||||| | ||||||||| | || || ||||||||| ||||| ||| |  ||||||| || |||||||||||||| |  |||||||||    
T  29496953 ctttatatgacacatctttatataacacatctctaaatcacacatctttaaataacacatatttatataacacatctttaaatcacacaacttcaaatag 29496854  T
Q  99 cacatctttatatcacacatc 119  Q
    ||||||||||||| |||||||    
T  29496853 cacatctttatataacacatc 29496833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 29496853 - 29496744
Alignment:
Q  11 cacatcttcaaataacacatatttatataacacatcttcaaatagcactt--ttatatagcaaatctttaaatcacaaatattcaaatagcacatcttta 108  Q
    |||||||| | ||||||||| |||| || ||||| ||||||||||||| |  ||||||| || |||||||||||||| |  |||||||| ||||||| ||    
T  29496853 cacatctttatataacacatctttaaatcacacaacttcaaatagcacatgtttatataacacatctttaaatcacacaacttcaaataacacatctata 29496754  T
Q  109 tatcacacat 118  Q
    ||| ||||||    
T  29496753 tataacacat 29496744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29496833 - 29496781
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||||| ||||    
T  29496833 ctttaaatcacacaacttcaaatagcacatgtttatataacacatctttaaat 29496781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29496788 - 29496744
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacat 45  Q
    |||||||||||||| ||||||||||||||| | ||||||||||||    
T  29496788 ctttaaatcacacaacttcaaataacacatctatatataacacat 29496744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 921 - 968
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatctt 48  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  921 ctttaaatcaaacatcttcaaataacacatatttatataacacatctt 968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 966 - 1018
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    |||| ||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  966 ctttgaatcacacatctttaaataacacatttttatataacacatctttaaat 1018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 940 - 1041
Alignment:
Q  5 aaatcacacatcttcaaataacacatatttatataacacatcttcaaatagcac--ttttatatagcaaatctttaaatcacaaatattcaaatagcaca 102  Q
    |||| |||||| || | ||||||||| |||  || ||||||||| ||||| |||  ||||||||| || |||||||||||||| || |||||||||||||    
T  940 aaataacacatatttatataacacatctttgaatcacacatctttaaataacacatttttatataacacatctttaaatcacacattttcaaatagcaca 1039  T
Q  103 tc 104  Q
    ||    
T  1040 tc 1041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 876 - 928
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    ||||||||||||||| | |||||||||||| |||||| |||||||||| ||||    
T  876 ctttaaatcacacatatgcaaataacacatctttatagaacacatctttaaat 928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 862 - 921
Alignment:
Q  60 tttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatatcacacatc 119  Q
    |||||||| || |||||||||||||| |||| |||||| ||||||||||||  |||||||    
T  862 tttatataacacatctttaaatcacacatatgcaaataacacatctttatagaacacatc 921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 119
Target Start/End: Original strand, 895 - 1011
Alignment:
Q  5 aaatcacacatcttcaaataacacatatttatataacacatcttcaaatagcac--ttttatatagcaaatctttaaatcacaaatattcaaatagcaca 102  Q
    |||| ||||||||| | | ||||||| |||| || | ||||||||||||| |||   |||||||| || |||||| ||||||| || || ||||| ||||    
T  895 aaataacacatctttatagaacacatctttaaatcaaacatcttcaaataacacatatttatataacacatctttgaatcacacatctttaaataacaca 994  T
Q  103 tctttatatcacacatc 119  Q
    | ||||||| |||||||    
T  995 tttttatataacacatc 1011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 12577123 - 12577237
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaatagcac--ttttatatagcaaatctttaaatcacaaatattcaaatag 98  Q
    ||||||||| |||||||| | ||||||||| |||| || |||||||||||||||||||   ||||||||  | |||||||||||||| || ||||||||     
T  12577123 ctttaaatctcacatctttatataacacatctttaaatcacacatcttcaaatagcacatatttatataatacatctttaaatcacacatcttcaaataa 12577222  T
Q  99 cacatctttatatca 113  Q
    || ||||||| ||||    
T  12577223 catatctttaaatca 12577237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 42145648 - 42145693
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatc 46  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||    
T  42145648 ctttaaatcacacatattcaaataacacatctttatataacacatc 42145693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 9882578 - 9882646
Alignment:
Q  60 tttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatat-cacacatcgtcaaata 127  Q
    |||||||| || |||||||||||||| || ||||||||||||||||||||||  ||||||| |||||||    
T  9882578 tttatataacacatctttaaatcacacatcttcaaatagcacatctttatataaacacatcatcaaata 9882646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 42145646 - 42145693
Alignment:
Q  72 atctttaaatcacaaatattcaaatagcacatctttatatcacacatc 119  Q
    |||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  42145646 atctttaaatcacacatattcaaataacacatctttatataacacatc 42145693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9882592 - 9882646
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatat-aacacatcttcaaata 54  Q
    |||||||||||||||||||||||| ||||| ||||||| |||||||| |||||||    
T  9882592 ctttaaatcacacatcttcaaatagcacatctttatataaacacatcatcaaata 9882646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 40387791 - 40387864
Alignment:
Q  40 acacatcttcaaatagcactt--ttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatat 111  Q
    ||||||||||||||||||| |  ||||||| |  |||||||||||||| || |||||||| |||||||||||||    
T  40387791 acacatcttcaaatagcacatctttatataactcatctttaaatcacacatcttcaaataacacatctttatat 40387864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40387827 - 40387865
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatata 39  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  40387827 ctttaaatcacacatcttcaaataacacatctttatata 40387865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 9882513 - 9882557
Alignment:
Q  13 catcttcaaataacacatatttatataacacatcttcaaatagca 57  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||||    
T  9882513 catcatcaaatatcacatctttatataacacatcttcaaatagca 9882557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 40387786 - 40387834
Alignment:
Q  5 aaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    |||||||||||||||||||| ||||| |||||||||| |||||| ||||    
T  40387786 aaatcacacatcttcaaatagcacatctttatataactcatctttaaat 40387834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 9882518 - 9882558
Alignment:
Q  91 tcaaatagcacatctttatatcacacatcgtcaaatagcat 131  Q
    ||||||| ||||||||||||| ||||||| |||||||||||    
T  9882518 tcaaatatcacatctttatataacacatcttcaaatagcat 9882558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 17289887 - 17289931
Alignment:
Q  9 cacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    ||||||| |||||||||||||| |||||| |||||||||| ||||    
T  17289887 cacacatattcaaataacacatctttatagaacacatctttaaat 17289931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 52466334 - 52466225
Alignment:
Q  11 cacatcttcaaataacacatatttatataacacatcttcaaatagcac--ttttatatagcaaatctttaaatcacaaatattcaaatagcacatcttta 108  Q
    |||||||| | ||||||||| |||| || |||||||||||||||||||   |||||||| || |||||||||||| | || |||||||| ||||| ||||    
T  52466334 cacatctttatataacacatctttaaatcacacatcttcaaatagcacatctttatataccacatctttaaatcatacatcttcaaataacacattttta 52466235  T
Q  109 tatcacacat 118  Q
    ||| ||||||    
T  52466234 tataacacat 52466225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 3472778 - 3472710
Alignment:
Q  60 tttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatatcacacatcgtcaaatag 128  Q
    |||||||| || |||||||||||||| || || |||||||||||||| |||| ||||||||||||||||    
T  3472778 tttatataacacatctttaaatcacacatctttaaatagcacatcttcatataacacatcgtcaaatag 3472710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Complemental strand, 15778208 - 15778162
Alignment:
Q  2 tttaaatcacacatcttcaaataacacatatttatataacacatctt 48  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||    
T  15778208 tttaaatcacacatcttcaaataagacatctttatataacacatctt 15778162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 52466269 - 52466225
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacat 45  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||    
T  52466269 ctttaaatcatacatcttcaaataacacatttttatataacacat 52466225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 52466314 - 52466262
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    |||||||||||||||||||||||| ||||| |||||||| |||||||| ||||    
T  52466314 ctttaaatcacacatcttcaaatagcacatctttatataccacatctttaaat 52466262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 3472764 - 3472710
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaatag 55  Q
    |||||||||||||||||| ||||| ||||| || |||||||||||| ||||||||    
T  3472764 ctttaaatcacacatctttaaatagcacatcttcatataacacatcgtcaaatag 3472710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 15778216 - 15778108
Alignment:
Q  24 aacacatatttatataacacatcttcaaata--gcacttttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatatcacacatcgt 121  Q
    ||||||| |||| || |||||||||||||||   ||  |||||||| || |||||| ||||||| || || || |||||||| |||| |||||||||| |    
T  15778216 aacacatttttaaatcacacatcttcaaataagacatctttatataacacatctttgaatcacacatctttaactagcacatttttaaatcacacatcat 15778117  T
Q  122 caaatagca 130  Q
    |||||||||    
T  15778116 caaatagca 15778108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 3586266 - 3586295
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacat 30  Q
    ||||||||||||||||||||||||||||||    
T  3586266 ctttaaatcacacatcttcaaataacacat 3586295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 5842130 - 5842175
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatc 46  Q
    ||||||||| |||||||| | |||||||||||| ||||||||||||    
T  5842130 ctttaaatctcacatctttatataacacatattcatataacacatc 5842175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39728111 - 39728066
Alignment:
Q  1 ctttaaatcacacatcttca-aataacacatatttatataacacat 45  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||    
T  39728111 ctttaaatcacacatcttcagaaaaacacatctttatataacacat 39728066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3475976 - 3476032
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaatagca 57  Q
    ||||| || ||||||||| |||| | |||| ||||||||||||||||| ||||||||    
T  3475976 ctttatataacacatctttaaatcatacatctttatataacacatctttaaatagca 3476032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18539094 - 18539050
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacat 45  Q
    |||||||||| || |  ||||||||||||||||||||||||||||    
T  18539094 ctttaaatcaaacttaatcaaataacacatatttatataacacat 18539050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18539139 - 18539087
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    ||||| || ||||||||| |||| |||||| ||||||||||||||||| ||||    
T  18539139 ctttacataacacatctttaaatcacacatctttatataacacatctttaaat 18539087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10000 - 10052
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  10000 ctttaaatcacacatctttaaataacacatctttatataacacatctttaaat 10052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 9991 - 10045
Alignment:
Q  65 atagcaaatctttaaatcacaaatattcaaatagcacatctttatatcacacatc 119  Q
    |||||| |||||||||||||| || || ||||| ||||||||||||| |||||||    
T  9991 atagcacatctttaaatcacacatctttaaataacacatctttatataacacatc 10045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 11509650 - 11509598
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  11509650 ctttaaatcacacatcttcaaatagcacatctttatataacacatctttaaat 11509598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 11509670 - 11509560
Alignment:
Q  11 cacatcttcaaataacacatatttatataacacatcttcaaatagcactt--ttatatagcaaatctttaaatcacaaatattcaaatagcacatcttta 108  Q
    |||||||| | |||| |||| |||| || ||||||||||||||||||| |  ||||||| || |||||||||||||| || |||||||| |||||| |||    
T  11509670 cacatctttatataaaacatctttaaatcacacatcttcaaatagcacatctttatataacacatctttaaatcacacatcttcaaataacacatcctta 11509571  T
Q  109 tatcacacatc 119  Q
    ||  |||||||    
T  11509570 tagaacacatc 11509560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 18148637 - 18148595
Alignment:
Q  3 ttaaatcacacatcttcaaataacacatatttatataacacat 45  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  18148637 ttaaatcacacatcttcaaataacacatctttatataacacat 18148595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11509605 - 11509558
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatctt 48  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||    
T  11509605 ctttaaatcacacatcttcaaataacacatccttatagaacacatctt 11509558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 34706041 - 34706085
Alignment:
Q  13 catcttcaaataacacatatttatataacacatcttcaaatagca 57  Q
    |||| ||||||| ||||| ||||||||||||||||||||||||||    
T  34706041 catcgtcaaatatcacatctttatataacacatcttcaaatagca 34706085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 34706150 - 34706201
Alignment:
Q  2 tttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    |||||||||||||||||||| || ||||| |||||||||||| |||| ||||    
T  34706150 tttaaatcacacatcttcaactagcacatctttatataacacgtctttaaat 34706201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 34706046 - 34706092
Alignment:
Q  91 tcaaatagcacatctttatatcacacatcgtcaaatagcatatcttt 137  Q
    ||||||| ||||||||||||| ||||||| |||||||||| ||||||    
T  34706046 tcaaatatcacatctttatataacacatcttcaaatagcaaatcttt 34706092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11391829 - 11391785
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacat 45  Q
    ||||||||| |||||||| | |||||||||||| |||||||||||    
T  11391829 ctttaaatctcacatctttatataacacatattcatataacacat 11391785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 34706059 - 34706115
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaatagca 57  Q
    ||||| || ||||||||||||||| || || |||||||||||||| || ||||||||    
T  34706059 ctttatataacacatcttcaaatagcaaatctttatataacacatttttaaatagca 34706115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19891960 - 19892012
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  19891960 ctttaaatcacacattttcaaataacacatctttatataacacatctttaaat 19892012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9547918 - 9547970
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    ||||||||||||||||| |||||||||| | ||||||||||||||||| ||||    
T  9547918 ctttaaatcacacatctacaaataacacgtctttatataacacatctttaaat 9547970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19770059 - 19770015
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacat 45  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||    
T  19770059 ctttaaattacacatcttcaaataacacatctttatataacacat 19770015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 27573013 - 27572946
Alignment:
Q  61 ttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatatc-acacatcgtcaaata 127  Q
    ||||||| || ||||||||| |||| || ||||||||||||||||||||||| ||||||| |||||||    
T  27573013 ttatataacacatctttaaaacacacatcttcaaatagcacatctttatatcaacacatcttcaaata 27572946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27573000 - 27572946
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatat-aacacatcttcaaata 54  Q
    ||||||| |||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  27573000 ctttaaaacacacatcttcaaatagcacatctttatatcaacacatcttcaaata 27572946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 3851990 - 3851890
Alignment:
Q  5 aaatcacacatcttcaaataacacatatttatataacacatcttcaaatagcac--ttttatatagcaaatctttaaatcacaaatattcaaatagcaca 102  Q
    |||| ||||||||| ||||||||||| ||||||| ||||||||| | |||||||   | |||||  |||||||||||| ||||  | |||||||||||||    
T  3851990 aaataacacatctttaaataacacatctttatatgacacatctttatatagcacatctctatatcacaaatctttaaagcacacttcttcaaatagcaca 3851891  T
Q  103 t 103  Q
    |    
T  3851890 t 3851890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 19891958 - 19892005
Alignment:
Q  72 atctttaaatcacaaatattcaaatagcacatctttatatcacacatc 119  Q
    |||||||||||||| || |||||||| ||||||||||||| |||||||    
T  19891958 atctttaaatcacacattttcaaataacacatctttatataacacatc 19892005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28708823 - 28708868
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatc 46  Q
    ||||||||| |||||||| | |||||||||||| ||||||||||||    
T  28708823 ctttaaatctcacatctttatataacacatattcatataacacatc 28708868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 22469043 - 22469079
Alignment:
Q  12 acatcttcaaataacacatatttatataacacatctt 48  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  22469043 acatctttaaataacacatctttatataacacatctt 22469079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 109067 - 109114
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatctt 48  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||    
T  109067 ctttaaatcacacatcttcaaatagcaaatatttatataacacatctt 109114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 106963 - 107004
Alignment:
Q  7 atcacacatcttcaaataacacatatttatataacacatctt 48  Q
    |||||||||||||||||| || ||||||||||||||||||||    
T  106963 atcacacatcttcaaatagcaaatatttatataacacatctt 107004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9132334 - 9132282
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||||||| ||||    
T  9132334 ctttaaatcccacaacttcaaataacacatctttatataacacatctttaaat 9132282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9132379 - 9132327
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||||||| ||||    
T  9132379 ctttaaatcgcacaacttcaaataacacatctttatataacacatctttaaat 9132327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 9132433 - 9132334
Alignment:
Q  22 ataacacatatttatataacacatcttcaaatagcac--ttttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatatcacacatc 119  Q
    ||||||| |||||| |  |||||||||||||||||||   |||||||| || ||||||||||| || |  |||||||| ||||||||||||| |||||||    
T  9132433 ataacacgtatttaaaccacacatcttcaaatagcacatctttatataacacatctttaaatcgcacaacttcaaataacacatctttatataacacatc 9132334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 9132423 - 9132367
Alignment:
Q  2 tttaaatcacacatcttcaaataacacatatttatataacacatcttcaaatagcac 58  Q
    |||||| |||||||||||||||| ||||| ||||||||||||||||| |||| ||||    
T  9132423 tttaaaccacacatcttcaaatagcacatctttatataacacatctttaaatcgcac 9132367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23633098 - 23633046
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||| ||||    
T  23633098 ctttaaatcacacatcttcaaatagcacatctttgtataacacatctttaaat 23633046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 23633112 - 23633053
Alignment:
Q  60 tttatatagcaaatctttaaatcacaaatattcaaatagcacatctttatatcacacatc 119  Q
    |||||||| || |||||||||||||| || |||||||||||||||||| ||| |||||||    
T  23633112 tttatataacacatctttaaatcacacatcttcaaatagcacatctttgtataacacatc 23633053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 90265 - 90318
Alignment:
Q  5 aaatcacacatcttcaaataacacatatttatataacacatcttcaaatagcac 58  Q
    |||| ||||||||||||||||||||| |||||||||||||| || | |||||||    
T  90265 aaattacacatcttcaaataacacatctttatataacacatttttatatagcac 90318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23633219 - 23633163
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaatagca 57  Q
    ||||| || |||||||||| |||||||||| ||||||||||| ||||| ||||||||    
T  23633219 ctttatataacacatcttcgaataacacatctttatataacatatctttaaatagca 23633163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 41137901 - 41137857
Alignment:
Q  75 tttaaatcacaaatattcaaatagcacatctttatatcacacatc 119  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||    
T  41137901 tttaaatcacacatattcaaatagcacatctttgtataacacatc 41137857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 52272980 - 52273036
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaatagca 57  Q
    ||||| || ||||||||| |||| |||||| ||||||||||||||||| ||||||||    
T  52272980 ctttatatgacacatctttaaatcacacatctttatataacacatctttaaatagca 52273036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 9132399 - 9132289
Alignment:
Q  11 cacatcttcaaataacacatatttatataacacatcttcaaatagcactt--ttatatagcaaatctttaaatcacaaatattcaaatagcacatcttta 108  Q
    |||||||| | ||||||||| |||| ||  |||| ||||||||| ||| |  ||||||| || ||||||||||| || |  |||||||| ||||||||||    
T  9132399 cacatctttatataacacatctttaaatcgcacaacttcaaataacacatctttatataacacatctttaaatcccacaacttcaaataacacatcttta 9132300  T
Q  109 tatcacacatc 119  Q
    ||| |||||||    
T  9132299 tataacacatc 9132289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 41137901 - 41137850
Alignment:
Q  2 tttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    |||||||||||||| |||||||| ||||| ||| ||||||||||||| ||||    
T  41137901 tttaaatcacacatattcaaatagcacatctttgtataacacatctttaaat 41137850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 41137922 - 41137821
Alignment:
Q  11 cacatcttcaaataacacatatttatataacacatcttcaaatagcac--ttttatatagcaaatctttaaatcacaaatattcaaatagcacatcttta 108  Q
    |||||||| | | |||||||||||| || |||||| ||||||||||||   ||| |||| || |||||||||||||| |  |||||||| ||||||| ||    
T  41137922 cacatcttaataaaacacatatttaaatcacacatattcaaatagcacatctttgtataacacatctttaaatcacacaacttcaaataacacatctata 41137823  T
Q  109 ta 110  Q
    ||    
T  41137822 ta 41137821  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12785297 - 12785342
Alignment:
Q  1 ctttaaatcacacatcttca-aataacacatatttatataacacat 45  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||    
T  12785297 ctttaaatcacacatcttcagaaaaacacatctttatataacacat 12785342  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 23633117 - 23633042
Alignment:
Q  12 acatcttcaaataacacatatttatataacacatcttcaaatagcac--ttttatatagcaaatctttaaatcaca 85  Q
    ||||||| | ||||||||| |||| || |||||||||||||||||||   ||| |||| || ||||||||||||||    
T  23633117 acatctttatataacacatctttaaatcacacatcttcaaatagcacatctttgtataacacatctttaaatcaca 23633042  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 52272950 - 52273002
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatcttcaaat 53  Q
    ||||| |||||||||||||||| | ||||| ||||||| ||||||||| ||||    
T  52272950 ctttatatcacacatcttcaaacatcacatctttatatgacacatctttaaat 52273002  T

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Target: scaffold0679 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0679
Description:

Target: scaffold0679; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 2380 - 2335
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacatatttatataacacatc 46  Q
    ||||||||| |||||||| | |||||||||||| ||||||||||||    
T  2380 ctttaaatctcacatctttatataacacatattcatataacacatc 2335  T

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Target: scaffold0139 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 22688 - 22717
Alignment:
Q  1 ctttaaatcacacatcttcaaataacacat 30  Q
    ||||||||||||||||||||||||||||||    
T  22688 ctttaaatcacacatcttcaaataacacat 22717  T

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