View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17864_low_3 (Length: 486)

Name: NF17864_low_3
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17864_low_3
NF17864_low_3
[»] chr5 (13 HSPs)
chr5 (8-469)||(10556505-10556968)
chr5 (164-469)||(10548546-10548841)
chr5 (199-383)||(9838575-9838759)
chr5 (270-345)||(10742987-10743062)
chr5 (273-460)||(19608035-19608222)
chr5 (199-417)||(10749228-10749446)
chr5 (270-382)||(11050120-11050232)
chr5 (203-314)||(10592729-10592840)
chr5 (270-389)||(10765356-10765475)
chr5 (199-388)||(10609488-10609677)
chr5 (270-355)||(10719173-10719258)
chr5 (297-389)||(10590668-10590760)
chr5 (273-389)||(10598941-10599057)
[»] chr6 (4 HSPs)
chr6 (196-354)||(12897340-12897498)
chr6 (196-354)||(12955853-12956011)
chr6 (270-415)||(12905035-12905180)
chr6 (196-335)||(12946416-12946555)
[»] chr2 (1 HSPs)
chr2 (196-354)||(17925682-17925840)
[»] chr3 (1 HSPs)
chr3 (213-324)||(31469459-31469570)


Alignment Details
Target: chr5 (Bit Score: 408; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 469
Target Start/End: Original strand, 10556505 - 10556968
Alignment:
Q  8 aagcaaagggaataatcttcagtgtta--actccttattatatacacctttctaactacaaaactcaaactccactatctatcacaccctcttatttcct 105  Q
    ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10556505 aagcaaagggaataatcttcagtgttcccactccttattatatacacctttctaactacaaaacttaaactccactatctatcacaccctcttatttcct 10556604  T
Q  106 caaagcctttttcccacatgcttcctacatttttcatttggnnnnnnncactccttattttcaacttcagcccaaaaacaattgcatttacaataggaaa 205  Q
    ||||||||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10556605 caaagcctttttccctcatgcttcctacatttttcatttggtttttttcactccttattttcaacttcagcccaaaaacaattgcatttacaataggaaa 10556704  T
Q  206 ccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgattcttggaatggttctatccatttttgcaac 305  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10556705 ccagagtgattatttgacattgctcaagtttaagaaatttatttccaatgacccacatagaatccttgattcttggaatggttctatccatttttgcaac 10556804  T
Q  306 tggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgcatggatccttatcttctcatgctgccaatc 405  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10556805 tggtatggaatcacatgcaacaccatgcatcaaagagttactgagttgaagttacctggatataagttgcatggatccttatcttctcatgctgccaatc 10556904  T
Q  406 ttacttttctcagacacgtcaaccttgcagacaacaaattctctggaaaaatcccccaagagtt 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10556905 ttacttttctcagacacgtcaaccttgcagacaacaaattctctggaaaaatcccccaagagtt 10556968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 164 - 469
Target Start/End: Original strand, 10548546 - 10548841
Alignment:
Q  164 tttcaacttcagcccaaaaacaattgcatttacaataggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacat 263  Q
    |||||| |||| | ||||| ||||| ||| |||| |||||||||||| |||| || |  ||||||| || || ||| |||||||  ||| ||||||||||    
T  10548546 tttcaatttcaacgcaaaatcaatttcatctacattaggaaaccaaactgatcatctatcattgcttaaattcaaggaatctataaccagtgacccacat 10548645  T
Q  264 agaatccttgattcttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctg 363  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||          ||| |||||||| | ||||||||||||||    
T  10548646 agaatgcttgattcttggaatggttctatccatttttgcaactggcatggaatcacgtgca----------tcaaagagttacagcgttgaagttacctg 10548735  T
Q  364 gatataagttgcatggatccttatcttctcatgctgccaatcttacttttctcagacacgtcaaccttgcagacaacaaattctctggaaaaatccccca 463  Q
    ||||||||||||||||||| |||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10548736 gatataagttgcatggatctttatcttctcatgtcgccaatctcacttttctcagacacgtcaaccttgcagacaacaaattctctcgaaaaatccccca 10548835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 199 - 383
Target Start/End: Complemental strand, 9838759 - 9838575
Alignment:
Q  199 taggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgattcttggaatggttctatccattt 298  Q
    |||||||||||| |||| || |  |||||||| | || ||  |||| || |||| ||||||| || || || | ||||||||||||  ||||||||| ||    
T  9838759 taggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccactt 9838660  T
Q  299 ttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgcatggatcc 383  Q
     ||||||||| ||||||||||||||||| |||||||||| ||||||||  | ||||| ||||  ||||| |||||||||||||||    
T  9838659 ctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatggatcc 9838575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 10743062 - 10742987
Alignment:
Q  270 cttgattcttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagtta 345  Q
    ||||| |||||||||  ||| ||||| || ||||| ||||||||||||||||||||| |||||||||| |||||||    
T  10743062 cttgagtcttggaattcttccatccacttctgcaagtggtatggaatcacatgcaaccccatgcatcaaagagtta 10742987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 460
Target Start/End: Complemental strand, 19608222 - 19608035
Alignment:
Q  273 gattcttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagt 372  Q
    |||||||||||| |||| |  || |||||||| ||| ||||||||||||||| | |||||||||| |||||||  || |||||  |||  |||||| | |    
T  19608222 gattcttggaatagttcaacacacttttgcaattggcatggaatcacatgcagccccatgcatcaaagagttatagaattgaacctacaaggatatgaat 19608123  T
Q  373 tgcatggatccttatcttctcatgctgccaatcttacttttctcagacacgtcaaccttgcagacaacaaattctctggaaaaatccc 460  Q
    ||||||||||  ||||| |||||  ||  |||||  ||||||||||| || | ||||||||| | || || |||| |||||| |||||    
T  19608122 tgcatggatcaatatctactcatattggtaatctctcttttctcagaaacttaaaccttgcaaagaataatttctttggaaacatccc 19608035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 199 - 417
Target Start/End: Complemental strand, 10749446 - 10749228
Alignment:
Q  199 taggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgattcttggaatggttctatccattt 298  Q
    ||||||||||||  ||| ||||| |||||| ||| |||||  |||| || || | ||||||| ||| |   ||||| |||||||||  ||| ||||| ||    
T  10749446 taggaaaccaaacagatcatttggcattgcacaaatttaaagaatcaatatcgagtgacccaaataaagctcttgaatcttggaattcttccatccactt 10749347  T
Q  299 ttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgcatggatccttatcttctcatgct 398  Q
     ||||| ||| ||||||||||||||||  |||||||| | ||||||||  ||||||| |||   |||||| | || |||||||| |||||  | |||| |    
T  10749346 ctgcaagtggcatggaatcacatgcaaacccatgcatgaaagagttacaaagttgaacttagaaggatatcatttacatggatctttatcaccccatgtt 10749247  T
Q  399 gccaatcttacttttctca 417  Q
    | |||||| ||||||||||    
T  10749246 ggcaatctcacttttctca 10749228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 382
Target Start/End: Complemental strand, 11050232 - 11050120
Alignment:
Q  270 cttgattcttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatata 369  Q
    ||||| |||||||||  ||| |||||||| ||||| ||| ||||||||||||||| |  ||||||||| ||||||||  |||||||  ||   ||||||     
T  11050232 cttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcagcctcatgcatcaaagagttacaaagttgaacctagaaggatatc 11050133  T
Q  370 agttgcatggatc 382  Q
    |||||||||||||    
T  11050132 agttgcatggatc 11050120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 203 - 314
Target Start/End: Original strand, 10592729 - 10592840
Alignment:
Q  203 aaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgattcttggaatggttctatccatttttgc 302  Q
    |||||||| |||| || || |||||||||| || ||| | ||||| ||||  |||||| |||||||||| ||||||||||||| |||||  || || |||    
T  10592729 aaaccaaactgatcatctggcattgctcaaattcaaggagtctatatccagcgacccatatagaatcctcgattcttggaatgcttctacacaattctgc 10592828  T
Q  303 aactggtatgga 314  Q
    |||||| |||||    
T  10592829 aactggcatgga 10592840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 389
Target Start/End: Complemental strand, 10765475 - 10765356
Alignment:
Q  270 cttgattcttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatata 369  Q
    ||||| |||||||||  ||| ||||| ||||| || ||| ||||||||||||||| |  ||||||||| || ||||| ||||||||  || | ||||||     
T  10765475 cttgaatcttggaattcttccatccacttttgaaagtggcatggaatcacatgcagcctcatgcatcaaagggttacagagttgaacctagcaggatatc 10765376  T
Q  370 agttgcatggatccttatct 389  Q
    |||| |||||||| ||||||    
T  10765375 agttacatggatctttatct 10765356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 199 - 388
Target Start/End: Original strand, 10609488 - 10609677
Alignment:
Q  199 taggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgattcttggaatggttctatccattt 298  Q
    |||||||||||| |||||||||| ||||||| || || ||  |||| || |||||||| ||| || || || | ||||||||||||  ||| ||||||||    
T  10609488 taggaaaccaaactgattatttgtcattgcttaaattcaaagaatcaatatccaatgatccaaatggagtcttagattcttggaatttttccatccattt 10609587  T
Q  299 ttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgcatggatccttatc 388  Q
     || || |||  |||| ||||||||| | | ||||| || |||||||  ||||||||  |    |||||| |||||||||||||| ||||    
T  10609588 atgtaagtggcgtggagtcacatgcagctctatgcaacaaagagttatagagttgaaccttgaaggatatcagttgcatggatccatatc 10609677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 10719258 - 10719173
Alignment:
Q  270 cttgattcttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaa 355  Q
    ||||| |||||||||  ||| ||||| || ||||| ||| ||||||||||||||| | |||||||| | |||||||| ||||||||    
T  10719258 cttgaatcttggaattcttccatccacttctgcaagtggcatggaatcacatgcagccccatgcatgaaagagttacagagttgaa 10719173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 389
Target Start/End: Complemental strand, 10590760 - 10590668
Alignment:
Q  297 ttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagttgcatggatccttatct 389  Q
    |||||||||||| ||||||||| |||||   ||| |||||| ||||||||  |||||||| |  | ||||| ||||||||||||||| |||||    
T  10590760 ttttgcaactggaatggaatcatatgcagtcccaagcatcaaagagttaccaagttgaagctgtcaggatacaagttgcatggatccatatct 10590668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 389
Target Start/End: Original strand, 10598941 - 10599057
Alignment:
Q  273 gattcttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatataagt 372  Q
    |||||||||||| |||| |  || |||||||| ||| ||||||||| ||||||  ||| |||||| ||||||||  |||||| ||| ||  | || ||||    
T  10598941 gattcttggaatagttcaactcacttttgcaattggcatggaatcatatgcaatcccaagcatcaaagagttacaaagttgaggttgccaagttacaagt 10599040  T
Q  373 tgcatggatccttatct 389  Q
    ||||||||||| |||||    
T  10599041 tgcatggatccatatct 10599057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 354
Target Start/End: Original strand, 12897340 - 12897498
Alignment:
Q  196 caataggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgattcttggaatggttctatcca 295  Q
    ||||||||||||||| |||| ||||| |||||||||| || ||  |||| ||||||| ||||||| | |     ||||| |||||||||  ||| |||||    
T  12897340 caataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttccagtgacccatacaatgctcttgaatcttggaattcttccatcca 12897439  T
Q  296 tttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttga 354  Q
    ||| ||||| ||| ||||||||||||||| | |||||||| |  ||||||| |||||||    
T  12897440 tttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacagagttga 12897498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 354
Target Start/End: Original strand, 12955853 - 12956011
Alignment:
Q  196 caataggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgattcttggaatggttctatcca 295  Q
    ||||||||||||||| |||| ||||| |||||||||| || ||  |||| ||||| | ||||||| | |     ||||| |||||||||  ||| |||||    
T  12955853 caataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttcaagtgacccatacaatgctcttgaatcttggaattcttccatcca 12955952  T
Q  296 tttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttga 354  Q
    ||| ||||| ||| | ||||||||||||| | |||||||| |  ||||||| |||||||    
T  12955953 tttctgcaagtggcaaggaatcacatgcagccccatgcatgaacgagttacagagttga 12956011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 415
Target Start/End: Original strand, 12905035 - 12905180
Alignment:
Q  270 cttgattcttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttgaagttacctggatata 369  Q
    ||||| |||||||||  ||| |||||||| ||||| ||| ||||||||||||||| | |||||||| |  ||||||| |||||||   ||    |||||     
T  12905035 cttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacagagttgagcctagaaagatatc 12905134  T
Q  370 agttgcatggatccttatcttctcatgctgccaatcttacttttct 415  Q
    |||| |||||||| |||||| | |||| | ||||||| ||||||||    
T  12905135 agttacatggatctttatctccccatgtttccaatctcacttttct 12905180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 335
Target Start/End: Original strand, 12946416 - 12946555
Alignment:
Q  196 caataggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgattcttggaatggttctatcca 295  Q
    ||||||||||||||| |||| ||||| |||||||||| || ||  |||| ||||||| ||||||| | | |   ||||| |||||||||   || || ||    
T  12946416 caataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttccagtgacccatacaaagctcttgaatcttggaattcatccattca 12946515  T
Q  296 tttttgcaactggtatggaatcacatgcaacaccatgcat 335  Q
     || ||||| ||| ||||||||||||||| | ||||||||    
T  12946516 cttctgcaagtggcatggaatcacatgcagccccatgcat 12946555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 354
Target Start/End: Complemental strand, 17925840 - 17925682
Alignment:
Q  196 caataggaaaccaaagtgattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgattcttggaatggttctatcca 295  Q
    ||||||||||||||| |||| ||||| |||||||||| || ||  |||| ||||| | ||||||| | | |   ||||| |||||||||  ||| |||||    
T  17925840 caataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaatttctagtgacccatacaaagctcttgaatcttggaattcttccatcca 17925741  T
Q  296 tttttgcaactggtatggaatcacatgcaacaccatgcatcatagagttactgagttga 354  Q
    ||| ||||| ||| ||||||||||||||| | |||||||| |  ||||||| |||||||    
T  17925740 tttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacagagttga 17925682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 324
Target Start/End: Complemental strand, 31469570 - 31469459
Alignment:
Q  213 gattatttgacattgctcaagtttaagaaatctatttccaatgacccacatagaatccttgattcttggaatggttctatccatttttgcaactggtatg 312  Q
    |||| |||| |||||||||| || ||| |||| || ||||| ||| || |||||||| | || ||||||||| | ||||  || |||||||| ||| |||    
T  31469570 gattttttggcattgctcaaattcaaggaatcaatatccaaagactcaaatagaatcttagactcttggaatagctctacacaattttgcaagtggcatg 31469471  T
Q  313 gaatcacatgca 324  Q
    ||||||||||||    
T  31469470 gaatcacatgca 31469459  T

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