View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17864_low_4 (Length: 484)
Name: NF17864_low_4
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 474
Target Start/End: Original strand, 25701483 - 25701926
Alignment:
| Q |
17 |
aacatgagctttgactcgaggcaagcttgagacatgtagagaccgaggaaattatcccaataaaacaaaagtttttgagttctagatataaacgaaacat |
116 |
Q |
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| T |
25701483 |
aacatgagctttgactcgaggcaagcttgagacatgtagagaccgaggaaattatcccaataaaacaaaagtttttgagttctagatataaacgaaacat |
25701582 |
T |
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| Q |
117 |
atatatttatataagtgttgatgaaatattaagtcacaaaaaatatatgtgcacacaaaaagttaataaaattatggacattttagaacactaaatgaca |
216 |
Q |
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| T |
25701583 |
atatatttatataagtgttgatgaaatattaagtcacaaaaaatatatgtgcacacaaaaagttaataaaattatggacattttagaaca---------- |
25701672 |
T |
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| Q |
217 |
ataaacactaaatgattcattttatgtcttaacatgaatcatatcgaaaaaggtcaaccatttatcttttggtgcaattaaactctttgactttggagtg |
316 |
Q |
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| T |
25701673 |
-------ctaaatgattcattttatgtcttaacatgaatcatatcgaaaaaggtcaaccatttattttttggtgcaattaaactctttgactttggagtg |
25701765 |
T |
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| Q |
317 |
tatagaccatctctgatatatttaaaacgtgcctcagagccaaagaatgacatatatatagtcactaaatttagctttctaagcaa---tgcaagacaaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25701766 |
tatagaccatctctgatatatttaaaacgtgcctcagagccaaagaatgacatatatatagtcactaaatttagctttctaagcaatattgcaagacaaa |
25701865 |
T |
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| Q |
414 |
ttaaaccgtgactgtgccaagatgctcatctacaatgcggaatccataattaccattacct |
474 |
Q |
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| T |
25701866 |
ttaaaccgtgactgtgccaagatgctcatctacaatgcggaatccataattaccattacct |
25701926 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 27730469 - 27730429
Alignment:
| Q |
320 |
agaccatctctgatatatttaaaacgtgcctcagagccaaa |
360 |
Q |
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| T |
27730469 |
agaccatctctgatatatttgaaatgtgcctcagagtcaaa |
27730429 |
T |
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