View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17864_low_6 (Length: 468)
Name: NF17864_low_6
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 53942359 - 53942572
Alignment:
| Q |
18 |
accaccctactctactaggaagtagtagtaaataagaagaaagggtgaatgaaaaattaatttagtgtgaatagtgaggatacaccattggataagtcaa |
117 |
Q |
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| T |
53942359 |
accaccctactctactaggaagtagtagtaaataagaagaaagggtgaatgaaaaattaatttagtgtcaatagtgaggatacaccattggataagtcaa |
53942458 |
T |
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| Q |
118 |
acttgcacacaacgatcattccaatggttagaaatcattctctaccatgaccacattaaggtgtcccactatagaaacaagttgttatgaaatctaaaaa |
217 |
Q |
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| T |
53942459 |
acttgcacacatcgatcattccaatggttagaaatcattctctaccatgaccacattaaggtgtcccactatagaaacaagttgttatgaaatctaaaaa |
53942558 |
T |
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| Q |
218 |
ctgaattctcttgt |
231 |
Q |
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|||||||||||||| |
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| T |
53942559 |
ctgaattctcttgt |
53942572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 261 - 461
Target Start/End: Original strand, 53942581 - 53942781
Alignment:
| Q |
261 |
tgattgtttcaccaaatagaaacaaagacacttatcgaaaacaagaacaagaagcagatgcagccacgaaaacaacaacaaaaatgacaatcctttcttc |
360 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53942581 |
tgatagtttcaccaaatagaaacaaagacacttatcgaaaacaagaacaagaagcagatgcagccacgaacacaacaacaaaaatgacaatcctttcttc |
53942680 |
T |
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| Q |
361 |
actctgttcttttcctccaattcattcatcttatccatttccaaattctgcattaacatgttcaacttctaaccttagaactcaaatccaatcctatgct |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
53942681 |
actctgttcttttcctccaattcattcatcttatccatttccaaattctgcattaacatgttcaatttctaaccttagaactcaaatccaatcctatgct |
53942780 |
T |
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| Q |
461 |
t |
461 |
Q |
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| T |
53942781 |
t |
53942781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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