View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17864_low_7 (Length: 461)
Name: NF17864_low_7
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 175 - 439
Target Start/End: Original strand, 37990748 - 37991012
Alignment:
| Q |
175 |
tatccgtgaatggagaaataacttgagcttgcactgtgtcccaaaccagtatccgggagccacctagcgttaattacacaccattgatattgaataaatg |
274 |
Q |
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| T |
37990748 |
tatccgtgaatggagaaataacttgagcttgcactgtgtcccaaaccagtatccagcagccacctagcgttaattacacaccattgatattgaataaatg |
37990847 |
T |
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| Q |
275 |
ttacaaaatgcatatagttttgttttgtcatgtcagtttgtgtcttcagtcaaaaatcaaaatgaagtctagattattcgtcctatagcttattggcttc |
374 |
Q |
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| T |
37990848 |
ttacaaaatgcatagagttttgttttgtcatgtcagtttgtgtcttcagtcaaaaatcaaaatgaagtctagattattcgtcctatagcttattggcttc |
37990947 |
T |
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| Q |
375 |
attctctttacctatagtcttgaaactattcccggaacagaatactgcagcatgtgtgcgtgtgc |
439 |
Q |
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| T |
37990948 |
attctctttacctatagtcttgaaactattcccggaacagaatactgcagcatgtgtgcgtgtgc |
37991012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 37990618 - 37990757
Alignment:
| Q |
13 |
cacagataaacaaaataagatcagaaataaaaacaaagaaacacatgaaagaagggttccacagtgtatgcaattggttattacattgtt-ggaaggaag |
111 |
Q |
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| T |
37990618 |
cacagataaacaaaataagatcagaaataaaaacaaagaaacacatgaatgaggggttccacagtgtatgcaattggttattacattgttgggaaggaag |
37990717 |
T |
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| Q |
112 |
cacaagataggataatgaatcaattgagtatatccatgaa |
151 |
Q |
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| T |
37990718 |
cacaagataggataatgaatcaattgagtatatccgtgaa |
37990757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 168 - 254
Target Start/End: Original strand, 33166025 - 33166111
Alignment:
| Q |
168 |
aatgatgtatccgtgaatggagaaataacttgagcttgcactgtgtcccaaaccagtatccgggagccacctagcgttaattacaca |
254 |
Q |
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|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| | |||||| ||||||||| |||||| |
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| T |
33166025 |
aatggtgtatccgtgaatggagaaataacttcagcttgcattgtgtcccaaaccagtatccagtagccacgtagcgttaagtacaca |
33166111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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