View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17864_low_8 (Length: 438)
Name: NF17864_low_8
Description: NF17864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17864_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 52829545 - 52829129
Alignment:
| Q |
18 |
aggtttagctggaatccaacctgttgacattcccgggattgagaatgtaagctctattccaccaatgctttgcttagtaacaatgatgtattgcttaaag |
117 |
Q |
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| T |
52829545 |
aggtttagctggaatccaacctgttgacattcccgggattgagaatgtaagctctattccaccaatgctttgcttagtaacaatgatgtattgcttgaag |
52829446 |
T |
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| Q |
118 |
gtgtatctcttttgctgctttgcagtttgatgtgacccgagttatagaaggccacgcctcctacctgtggatgacaccaaaaatactggagcagcttgaa |
217 |
Q |
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| T |
52829445 |
gtgtatctcttttgctgctttgcaggttgatgtgacccgagttatagaaggccactcttcctacttgtggatgacaccaaaaatactggagcagcttgaa |
52829346 |
T |
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| Q |
218 |
ttggacaattattttgctgtttacaaaggtgaacatgaaaaacctcaggaagagaagagcaccatggactagctttagtttctatccctttctcctcatc |
317 |
Q |
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| T |
52829345 |
ttggacaattattttgctgtttacaaaggtgaacatgaaaaacctcaggaagagaagagcaccatggactagctttagtttctatccctttctcctcatc |
52829246 |
T |
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| Q |
318 |
gttccactctcatttatttgtttttccgaggagtaatatcaagctatagatataggtaaatgaaacattagaaatggtggtttaatttagaataattgat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52829245 |
gttccactctcatttatttgtttttccgaggagtaatatcaagctaaagatataggtaaatgaaacattagaaatggtggtttaatttagaataattgat |
52829146 |
T |
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| Q |
418 |
ggcataggaggtctgtg |
434 |
Q |
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| T |
52829145 |
ggcataggaggtttgtg |
52829129 |
T |
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