View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17865_high_1 (Length: 766)
Name: NF17865_high_1
Description: NF17865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17865_high_1 |
 | |
|
| [»] scaffold0134 (2 HSPs) |
| | |
|
| [»] scaffold0054 (3 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 546; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 16 - 701
Target Start/End: Complemental strand, 9568939 - 9568251
Alignment:
| Q |
16 |
atcaagtatcctccacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagataca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9568939 |
atcaagtatcctccacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatcaccgtaaccagcgtgctcacccataatagataca |
9568840 |
T |
|
| Q |
116 |
taacaaatgacattatagtcatttctaagttcattgtaaccaaatccatgaagataagatgtatcatctatactatcaaaatcttcaacatcttcttcga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
9568839 |
taacaaatgacattatagtcatttctaagttcatcgtaaccaaatccatgaagataagatgtatcatctatactatcaaaatcttcaacatcttcgtcaa |
9568740 |
T |
|
| Q |
216 |
tagacaactcaactaactcatatggagtgggaggaatgagcttgattgcatgtgtagatgggttccacaatagagttttgccattataatcatcttgatg |
315 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9568739 |
tagacgactcaactaactcatatggagtggggggaatgagcttgattgcatgtgtagatgggttccacaatagagttttgccattataatcatcttgatg |
9568640 |
T |
|
| Q |
316 |
gagacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaattgaaacggtttgcaaatggatttgtgaaatctaattttactttgttctcaaac |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9568639 |
gagacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaattgaaacggtttgcaaatggatttgtgaaatctaattgtactttgttctcaaac |
9568540 |
T |
|
| Q |
416 |
ctttcaccagaaatagaatagaaaacttctttaccaagttctaattcctttactagcagagatgctccatcgtaatacgagcatcggtgagaactagata |
515 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| | ||| ||||||| |||||| |
|
|
| T |
9568539 |
ctttcaccataaatagaatagaaaacttctttaccaagttctaaatcctttagaagaagagatgctccatcgtaataaggatatctgtgagaattagata |
9568440 |
T |
|
| Q |
516 |
aaagattcttgtagaacatgttcatgaagtgagggttttcaggtaag---agataccatgatttgcgaacgcattcaaatctcttaatagatttaaaagg |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
9568439 |
aaagattcttgtagaacatgttcatgaagtgagggttttcagataagatcagagaccatgatttacgaacgcattcaaatcgcttaatagatttaaaagg |
9568340 |
T |
|
| Q |
613 |
caatttggatagaatggagaaggcaatatcatcagatatatcggtggtgctcacctttcnnnnnnnagcagcgactgactccatcggcg |
701 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
9568339 |
caatttggatagaatagagaaggcaatatcatcagatatacaggttgtgctcacctttcttttttttgcagcgactgactccatcggcg |
9568251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 745
Target Start/End: Original strand, 9582313 - 9583036
Alignment:
| Q |
16 |
atcaagtatcctccacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagataca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |||| ||| || |||||||| |||||| |||||| ||| |
|
|
| T |
9582313 |
atcaagtatcctccacgagttagttcttaagctatatatcacccaaattgggtctaaagacatacatccatagccagcgtgttcacccgtaatagttacg |
9582412 |
T |
|
| Q |
116 |
taacaaatgacattatagtcatttctaagttcattgtaaccaaatccatgaagataagatgtatcatctatactatcaaaatcttcaacatcttcttcga |
215 |
Q |
| |
|
| ||| ||||| ||||||||||||||||| | | ||| |||||||||||||||||| | ||||||| ||| ||| ||||||| |||||||||| | |
|
|
| T |
9582413 |
tgacagatgaccttatagtcatttctaagattgtcgtagccaaatccatgaagataatacgtatcatgtatgctaacaaaatccacaacatcttca---a |
9582509 |
T |
|
| Q |
216 |
tagacaactcaactaactcatatggagtgggaggaatgagcttgattgcatgtgtagatgggttccacaatagagttttgccattataatcatcttgatg |
315 |
Q |
| |
|
||||| ||||||||||||||| || ||||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
9582510 |
tagacgactcaactaactcatcctgactggga---acgagcttgattgcatgtgccgatgggttccacaatagagttttgccataataataatcttgata |
9582606 |
T |
|
| Q |
316 |
gagacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaattgaaacggtttgcaaatggatttgtgaaatctaattttactttgttctcaaac |
415 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |||| ||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
9582607 |
gagacaaaatgtgccattaatactaccaaagccaaaaatacgaaatttgaaacggtctgcatatgcatttgagaaatctaattgaactttgttctcaaac |
9582706 |
T |
|
| Q |
416 |
ctttcaccagaaatagaatagaaaacttctttaccaagttctaattcctttactagcagagatgctccatcgtaatacgagcatcggtgagaactagata |
515 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| || ||| ||| ||||||||| | ||||||||||| | ||| |||||||| |||||| |
|
|
| T |
9582707 |
ctttcaccagaaatagaatagaaaacgtctttaccaagttcgaaatcccttaggagcagagatcccccatcgtaataaggacattggtgagaattagata |
9582806 |
T |
|
| Q |
516 |
aaagattcttgtagaacatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaa |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||||| | ||||| |||||||||||||| |
|
|
| T |
9582807 |
aaagattcttgtagaacatgttcatgaagtgagggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaa |
9582906 |
T |
|
| Q |
616 |
tttggatagaatggagaaggcaatatcatcagatatatcggtggtgctcacctttcnnnnnnnagcagcgactgactccatcggcggttgcaaattggaa |
715 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9582907 |
tttggataaaatagagaaggcaatttcatcaggtatataggtggtgctcacctttctttttttagcagcgactgactccatcggcggttgcaaattggaa |
9583006 |
T |
|
| Q |
716 |
tgcaatgagatcttgaaagcgcaaagtgat |
745 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||| |
|
|
| T |
9583007 |
tgcagtgagatcctgaaagcacaaagtgat |
9583036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 745
Target Start/End: Original strand, 9588008 - 9588731
Alignment:
| Q |
16 |
atcaagtatcctccacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagataca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |||| ||| || |||||||| |||||| |||||| ||| |
|
|
| T |
9588008 |
atcaagtatcctccacgagttagttcttaagctatatatcacccaaattgggtctaaagacatacatccatagccagcgtgttcacccgtaatagttacg |
9588107 |
T |
|
| Q |
116 |
taacaaatgacattatagtcatttctaagttcattgtaaccaaatccatgaagataagatgtatcatctatactatcaaaatcttcaacatcttcttcga |
215 |
Q |
| |
|
| ||| ||||| ||||||||||||||||| | | ||| |||||||||||||||||| | ||||||| ||| ||| ||||||| |||||||||| | |
|
|
| T |
9588108 |
tgacagatgaccttatagtcatttctaagattgtcgtagccaaatccatgaagataatacgtatcatgtatgctaacaaaatccacaacatcttca---a |
9588204 |
T |
|
| Q |
216 |
tagacaactcaactaactcatatggagtgggaggaatgagcttgattgcatgtgtagatgggttccacaatagagttttgccattataatcatcttgatg |
315 |
Q |
| |
|
||||| ||||||||||||||| || ||||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
9588205 |
tagacgactcaactaactcatcctgactggga---acgagcttgattgcatgtgccgatgggttccacaatagagttttgccataataataatcttgata |
9588301 |
T |
|
| Q |
316 |
gagacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaattgaaacggtttgcaaatggatttgtgaaatctaattttactttgttctcaaac |
415 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |||| ||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
9588302 |
gagacaaaatgtgccattaatactaccaaagccaaaaatacgaaatttgaaacggtctgcatatgcatttgagaaatctaattgaactttgttctcaaac |
9588401 |
T |
|
| Q |
416 |
ctttcaccagaaatagaatagaaaacttctttaccaagttctaattcctttactagcagagatgctccatcgtaatacgagcatcggtgagaactagata |
515 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| || ||| ||| ||||||||| | ||||||||||| | ||| |||||||| |||||| |
|
|
| T |
9588402 |
ctttcaccagaaatagaatagaaaacgtctttaccaagttcgaaatcccttaggagcagagatcccccatcgtaataaggacattggtgagaattagata |
9588501 |
T |
|
| Q |
516 |
aaagattcttgtagaacatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaa |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||| ||||||||| | ||||| |||||||||||||| |
|
|
| T |
9588502 |
aaagattcttgtagaacatgttcatgaagtgagggttttcagataagagagaccatgctttgcgaatgcattcaaaccgtttaatggatttaaaaggcaa |
9588601 |
T |
|
| Q |
616 |
tttggatagaatggagaaggcaatatcatcagatatatcggtggtgctcacctttcnnnnnnnagcagcgactgactccatcggcggttgcaaattggaa |
715 |
Q |
| |
|
|||||||| ||| ||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9588602 |
tttggataaaatagagaaggcaatttcatcaggtatataggtggtgctcacctttctttttttagcagcgactgactccatcggcggttgcaaattggaa |
9588701 |
T |
|
| Q |
716 |
tgcaatgagatcttgaaagcgcaaagtgat |
745 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||| |
|
|
| T |
9588702 |
tgcagtgagatcctgaaagcacaaagtgat |
9588731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 19 - 745
Target Start/End: Original strand, 9594109 - 9594832
Alignment:
| Q |
19 |
aagtatcctccacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| | |||||||||| ||||||||| || ||| | || |||||| |||||| ||| ||| |
|
|
| T |
9594109 |
aagtatcctccacgagttagttcttaagctatatatcacccaaattgggtctaaagacatatctccatagccatcatgttcacccctaatagttacgtaa |
9594208 |
T |
|
| Q |
119 |
caaatgacattatagtcatttctaagttcattgtaaccaaatccatgaagataagatgtatcatctatactatcaaaatcttcaacatcttcttcga-ta |
217 |
Q |
| |
|
|| ||||| ||| ||||||||||||| | | |||||||||||||||||||||| || |||||| ||| ||| |||||| ||||||| || || || |
|
|
| T |
9594209 |
catatgaccttagagtcatttctaagattgtcgtaaccaaatccatgaagataatatctatcatttatgctaacaaaatgctcaacat----ttggaata |
9594304 |
T |
|
| Q |
218 |
gacaactcaactaactcatatggagtgggaggaatgagcttgattgcatgtgtagatgggttccacaatagagttttgccattataatcatcttgatgga |
317 |
Q |
| |
|
|| ||||||||||| |||| ||||||||| | ||||||||| | |||||||||||||||||||||| ||| || |||| ||||| |||||||| || |
|
|
| T |
9594305 |
aacgactcaactaacacatacggagtggga---acgagcttgatcacgtgtgtagatgggttccacaatacagtgtttccataataataatcttgataga |
9594401 |
T |
|
| Q |
318 |
gacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaatt---gaaacggtttgcaaatggatttgtgaaatctaattttactttgttctcaaa |
414 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| |||||||||||| || ||||||||||| |
|
|
| T |
9594402 |
gacaaaatgtcccattaatactaccaaaaccaaaaatacgaaattttttgaaacggtttgcatatggatttgagaaatctaatttaacattgttctcaaa |
9594501 |
T |
|
| Q |
415 |
cctttcaccagaaatagaatagaaaacttctttaccaagttctaattcctttactagcagagatgctccatcgtaatacgagcatcggtgagaactagat |
514 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| || ||||||| ||||||||| | || |||||||| | |||||||||||| ||||| |
|
|
| T |
9594502 |
cctttcaccagaaatagaatagaaaacgtctttaccaagttcgaaatcctttagaagcagagatcccccgtcgtaataaggacatcggtgagaattagat |
9594601 |
T |
|
| Q |
515 |
aaaagattcttgtagaacatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggca |
614 |
Q |
| |
|
|| ||||| ||| ||||||||||||||||||| ||||||| ||||||| |||||| ||||||||| |||||||||| ||||| |||||||| ||| | |
|
|
| T |
9594602 |
aagagattgttgcggaacatgttcatgaagtgatcgttttcacataagagagaccatgctttgcgaacacattcaaatcgcttaaaagatttaataggta |
9594701 |
T |
|
| Q |
615 |
atttggatagaatggagaaggcaatatcatcagatatatcggtggtgctcacctttcnnnnnnnagcagcgactgactccatcggcggttgcaaattgga |
714 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || || ||||||||||| ||||||| |||||||| |
|
|
| T |
9594702 |
atttagatagaatggagaaggaaatatcatcagctatataggtggtgctcacctttctcttttttgcggccactgactccatgagcggttgtaaattgga |
9594801 |
T |
|
| Q |
715 |
atgcaatgagatcttgaaagcgcaaagtgat |
745 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
|
|
| T |
9594802 |
atgcaatgagatattgaaagcgcaaagtgat |
9594832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 721
Target Start/End: Complemental strand, 9574070 - 9573376
Alignment:
| Q |
16 |
atcaagtatcctccacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagataca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||| | |||| | |||||| | ||||||||| |
|
|
| T |
9574070 |
atcaagtatcctccacgagttagttcttaagctatatatctcccagaatgggtctaaagacatatttccgtagctagcgcgttcacccttgatagataca |
9573971 |
T |
|
| Q |
116 |
taacaaatgacattatagtcatttctaagttcattgtaaccaaatccatgaagataagatgtatcatctata--ctatcaaaatcttcaacatcttcttc |
213 |
Q |
| |
|
||||||| ||||| ||||||||||||||| | | |||||||||||||||||||||| |||| ||||||| | | ||||| |||| ||| | |
|
|
| T |
9573970 |
taacaaaagacataatagtcatttctaagattgtcataaccaaatccatgaagataagccgtataatctatataccaaaaaaatgttcaccatttgg--- |
9573874 |
T |
|
| Q |
214 |
gatagacaactcaactaactcatatggagtgggaggaatgagcttgattgcatgtgtagatgggttccacaatagagttttgccattataatcatcttga |
313 |
Q |
| |
|
|||||| |||| |||||||||| ||||||||||||||||||||||||||| | || |||||||||||| ||||||||||||||| |||| || ||||| |
|
|
| T |
9573873 |
gataga-aacttaactaactcacatggagtgggaggaatgagcttgattgtgagggtggatgggttccacgatagagttttgccataataaccaccttga |
9573775 |
T |
|
| Q |
314 |
tggagacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaattgaaacggtttgcaaatggatttgtgaaatctaattttactttgttctcaa |
413 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |||| |||| |||||| |
|
|
| T |
9573774 |
tggagacaaaatgtgccattaatactaccaaaaccaaaaatacgaaacttgaaacggtttgcatgtggatttgagaaatctaactttaatttgatctcaa |
9573675 |
T |
|
| Q |
414 |
acctttcaccagaaatagaatagaaaacttctttaccaagttctaattcctttactagcagagatgctccatcgtaa-tacgagcatcggtgagaactag |
512 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| || ||||||| |||| |||||| ||||||||| || | ||||| |
|
|
| T |
9573674 |
acctttcaccataaatagaatagaaaacgtctttaccaagttcaaaatcctttaggagcaaagatgccccatcgtaattaaggacatcg----------- |
9573586 |
T |
|
| Q |
513 |
ataaaagattcttgtagaacatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaagg |
612 |
Q |
| |
|
||| ||||| ||| | ||||||||| | |||||| |||||||| ||| ||| |||||||||||||||| |||||||||| ||||| |||||||| ||| |
|
|
| T |
9573585 |
-taagagattgttgcaaaacatgttcttaaagtgatggttttcaattaacagagaccatgatttgcgaacacattcaaatcgcttaaaagatttaatagg |
9573487 |
T |
|
| Q |
613 |
caatttggatagaatggagaaggc-aatatcatcagatatatcggtggtgctcacctttcnnnnnnnagc-agcgactgactccatcggcggttgcaaat |
710 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || ||| ||||||||||| ||||||||||||| |
|
|
| T |
9573486 |
caatttggatagaatggagaaggcaaatatcatcaggtatataggtggtgctcacctttcttttttctgcaagccactgactccattggcggttgcaaat |
9573387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 27 - 745
Target Start/End: Original strand, 9602920 - 9603635
Alignment:
| Q |
27 |
tccacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagatacataacaaatgac |
126 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| | |||||||||| ||||| ||| || | |||||| | |||| |||||| || ||||| ||||| |
|
|
| T |
9602920 |
tccacgagttagttcttaagctatatttcacccaaattgggtctaaagacatatgtccatagctagcgtgttgacccgtaatagttatgtaacatatgac |
9603019 |
T |
|
| Q |
127 |
attatagtcatttctaagttcattgtaaccaaatccatgaagataagatgtatcatctatactatcaaaatcttcaacatcttcttcgatagacaactca |
226 |
Q |
| |
|
|||||| ||||||||||| || | |||||||||||||||||||||||| |||| | ||| ||| ||||||| | ||||||||| | |||| ||||| |
|
|
| T |
9603020 |
attataatcatttctaaggtcgtcgtaaccaaatccatgaagataagacgtatgaattatgctaacaaaatccttaacatcttcaac---agacgactca |
9603116 |
T |
|
| Q |
227 |
actaactcatatggagtgggaggaatgagcttgattgcatgtgtagatgggttccacaatagagttttgccattataatcatcttgatggagacaaagtg |
326 |
Q |
| |
|
||||||| || | ||||||| | |||||||||| | |||||||||||||||||||||| ||| |||| || ||||| | |||||| |||||||| || |
|
|
| T |
9603117 |
actaacttatccgtagtggga---acgagcttgatttcctgtgtagatgggttccacaatacagtattgcaataataataagcttgatagagacaaaatg |
9603213 |
T |
|
| Q |
327 |
tgccattaatactaccaaaaccaaaaatacgaaaattgaaacggtttg---caaatggatttgtgaaatctaattttactttgttctcaaacctttcacc |
423 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| || |||||||||| || ||| ||||| |||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
9603214 |
tcccattaatactaccaaaaccaaaaatacgaaatttaaaacggtttgcatcatatgaatttgggaaatctattttaactttgttctcaaacctttcacc |
9603313 |
T |
|
| Q |
424 |
agaaatagaatagaaaacttctttaccaagttctaattcctttactagcagagatgctccatcgtaatacgagcatcggtgagaactagataaaagattc |
523 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| || ||| ||| || ||||||| || |||||||| | ||||| |||||| || |||| ||||| |
|
|
| T |
9603314 |
agaaatagaatagaaaacgtcttgaccaagtttgaaatcccttaggaggagagatgtcccgtcgtaataaggacatcgatgagaattaaataagagattg |
9603413 |
T |
|
| Q |
524 |
ttgtagaacatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggata |
623 |
Q |
| |
|
||| |||| ||||||| || | |||| |||| ||||||| |||||| ||| | || ||||||||||| ||||| |||||||| |||||||||||||| |
|
|
| T |
9603414 |
ttgcagaatgtgttcataaaactacggttctcagataagagagaccatggtttacaaaagcattcaaatcgcttaaaagatttaagaggcaatttggata |
9603513 |
T |
|
| Q |
624 |
gaatggagaaggcaatatcatcagatatatcggtggtgctcacctttcnnnnnnnagcagcgactgactccatcggcggttgcaaattggaatgcaatga |
723 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||| ||||| |||| || |||||||| | |||||||||| |||||||||||| |
|
|
| T |
9603514 |
gaatggagaaggcaatatcatcaggtatataggtggtgctacccttttcgttctttacagccaccgactccattgcaggttgcaaatcggaatgcaatga |
9603613 |
T |
|
| Q |
724 |
gatcttgaaagcgcaaagtgat |
745 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
9603614 |
gatcttgaaagcgcaaagtgat |
9603635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 16 - 439
Target Start/End: Original strand, 54295414 - 54295840
Alignment:
| Q |
16 |
atcaagtatcctccacgagttagttcttaagctatatatcttccagaacgggtctaaagtcatatctccgtaaccagcgtgctcacccataatagataca |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||| |||| |||||| |||||| ||| | |||| ||||| |
|
|
| T |
54295414 |
atcaagtatcctccatgagttagttcttaagctatatatctcccagaaggagtctaaagacataactccgtggtcagcgtattcaacatcaatacataca |
54295513 |
T |
|
| Q |
116 |
taacaaatgacattatagtcatttctaagttcattgtaaccaaatccatgaagataagatgtatcatctatactatcaaaatcttcaacatct---tctt |
212 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| | |||||||||||||||| |||| ||||||| ||| ||| ||||||| ||||||| | | | |
|
|
| T |
54295514 |
taacaaatgagcttatagtcatttataagttcgtcgtaaccaaatccatgattataatatgtatctattatcctaacaaaatcctcaacatttgagtttg |
54295613 |
T |
|
| Q |
213 |
cgatagacaactcaactaactcatatggagtgggaggaatgagcttgattgcatgtgtagatgggttccacaatagagttttgccattataatcatcttg |
312 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||||||||||||||||||| | |||||||| |||||||||| ||||||||||| ||||||||| | |
|
|
| T |
54295614 |
agatagacgactcaataaactcatttggagtgggaggaatgagcttgattgtgttggtagatggattccacaatacagttttgccataataatcatcctc |
54295713 |
T |
|
| Q |
313 |
atggagacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaattgaaacggtttgcaaatggatttgtgaaatctaattttactttgttctca |
412 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||||| |||| ||||| || |||||||||||||||||| |||||||||||| ||||| || | | |
|
|
| T |
54295714 |
atggagacaaattatgccattaacactaccaaaaccaagaataacaaaatcacaatggtttgcaaatggatttgggaaatctaatttaactttattttga |
54295813 |
T |
|
| Q |
413 |
aacctttcaccagaaatagaatagaaa |
439 |
Q |
| |
|
|||||||||||| |||| ||||||||| |
|
|
| T |
54295814 |
aacctttcaccaaaaatggaatagaaa |
54295840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 560 - 653
Target Start/End: Original strand, 54295949 - 54296042
Alignment:
| Q |
560 |
aagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggagaaggcaatatcatcagatatat |
653 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||| |||| |||||||| ||||| ||| |||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
54295949 |
aagagagaccatgatctacgaacgcattcaaatcgtttaaaagatttaagaggcagttttgataaaatggagaaggaaatatcatcaggtatat |
54296042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 313 - 448
Target Start/End: Complemental strand, 54290811 - 54290676
Alignment:
| Q |
313 |
atggagacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaattgaaacggtttgcaaatggatttgtgaaatctaattttactttgttctca |
412 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||||||||| |||||| | | || || ||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
54290811 |
atggagacacagtgtgccattaaggctaccatgaccaaaaataggaaaataggcatcgtgtgtaaatggatttgaccaatctaatttgactttattctca |
54290712 |
T |
|
| Q |
413 |
aacctttcaccagaaatagaatagaaaacttcttta |
448 |
Q |
| |
|
||||||| ||||||| | |||| | |||||||||| |
|
|
| T |
54290711 |
aaccttttgccagaaagaaaatatagaacttcttta |
54290676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 647
Target Start/End: Complemental strand, 37895017 - 37894937
Alignment:
| Q |
567 |
accatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggagaaggcaatatcatcag |
647 |
Q |
| |
|
||||||||| | |||| |||||||||| ||| | |||||| | ||| | ||||||||||||||||||||||| ||| |||| |
|
|
| T |
37895017 |
accatgattagtgaacacattcaaatcgcttcaaagatttgagagggagtttggatagaatggagaaggcaacatcttcag |
37894937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 152 - 444
Target Start/End: Complemental strand, 42445904 - 42445610
Alignment:
| Q |
152 |
taaccaaatccatgaagataagatgtatcatc--tatactatcaaaatcttcaacatcttcttcgatagacaactcaactaactcatatggagtgggagg |
249 |
Q |
| |
|
||||||||||||||||||||||| | |||| ||||||| | ||||| ||| || | || ||||||| |||||||||||||| || || |||| |
|
|
| T |
42445904 |
taaccaaatccatgaagataagacaaaacatcaatatactaactaaatcctcaccagcatccgagatagacgactcaactaactcaacaagactgagagg |
42445805 |
T |
|
| Q |
250 |
aatgagcttgattgcatgtgtagatgggttccacaatagagttttgccattataatcatcttgatggagacaaagtgtgccattaatactaccaaaacca |
349 |
Q |
| |
|
||||| |||||||| || |||||||| |||||||||| | ||||||||| || ||||| || ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42445804 |
aatgaatttgattgcttgggtagatggattccacaatacaattttgccataattatcatattcatggagacagagtgtgccattaatactaccaaaacca |
42445705 |
T |
|
| Q |
350 |
aaaatacgaaaattgaaacggtttgcaaatggatttgtgaaatctaattttactttgttctcaaacctttcaccagaaatagaatagaaaacttc |
444 |
Q |
| |
|
||||||||||||| || | | |||| ||||||||| | |||||||||| || || ||||| ||||| | |||||||| | |||| |||||||| |
|
|
| T |
42445704 |
aaaatacgaaaatcaaatggatgtgcagatggatttgagtaatctaatttgaccttattctcgaacctctgaccagaaagaaaatataaaacttc |
42445610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 529 - 633
Target Start/End: Complemental strand, 42445525 - 42445421
Alignment:
| Q |
529 |
gaacatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatg |
628 |
Q |
| |
|
||||||||||||||| ||| ||||||||| ||||||| |||| |||| ||||| |||||||||| ||||| |||||||| ||| ||||| |||| |||| |
|
|
| T |
42445525 |
gaacatgttcatgaaatgatggttttcagataagagagaccacaatttacgaacacattcaaatcgcttaaaagatttaagaggtaattttgatataatg |
42445426 |
T |
|
| Q |
629 |
gagaa |
633 |
Q |
| |
|
||||| |
|
|
| T |
42445425 |
gagaa |
42445421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 7793252 - 7793164
Alignment:
| Q |
317 |
agacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaattgaaacggtttgcaaatggatttgtgaaatctaattttacttt |
405 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||||||||||| || ||||| |||||||||||| | |||||||||| ||||| |
|
|
| T |
7793252 |
agacaaagtataccattaatactaccaaaaccgaaaatacgaaaacaaaattggtttccaaatggatttgagtaatctaatttgacttt |
7793164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 2e-36; HSPs: 22)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 475 - 653
Target Start/End: Original strand, 34279321 - 34279499
Alignment:
| Q |
475 |
agatgctccatcgtaatacgagcatcggtgagaactagataaaagattcttgtagaacatgttcatgaagtgagggttttcaggtaagagataccatgat |
574 |
Q |
| |
|
|||||||||||| ||||| || || || |||||| |||||| | || ||||| ||||||||||||||||||| | ||||||| ||| |||||||||||| |
|
|
| T |
34279321 |
agatgctccatcataataagaacaacgatgagaattagataccaaatccttgtggaacatgttcatgaagtgatgattttcagataaaagataccatgat |
34279420 |
T |
|
| Q |
575 |
ttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggagaaggcaatatcatcagatatat |
653 |
Q |
| |
|
|| | ||| |||||||| ||||| | |||||||| ||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
34279421 |
ttacaaacacattcaaaactcttgaaagatttaagaggtaattttgaaagaatggagaaggcaatatcatcagatatat |
34279499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 316 - 645
Target Start/End: Complemental strand, 29144701 - 29144369
Alignment:
| Q |
316 |
gagacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaattgaaacggtttgcaaatggatttgtgaaatctaattttactttgttctcaaac |
415 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| ||||||||||| || || ||||||||| |
|
|
| T |
29144701 |
gagacaaagtataccattaatactaccaaaaccaaaaatacgaaaattgtataggtttgcgaatggatttaaaaaatctaatttcaccttattctcaaac |
29144602 |
T |
|
| Q |
416 |
ctttcaccagaaatagaatagaaaacttctttacca-agttctaattc--ctttactagcagagatgctccatcgtaatacgagcatcggtgagaactag |
512 |
Q |
| |
|
|| ||||| |||| |||||| ||| | |||| | | || | |||| || || || ||||||||||| |||||||| | | | || || ||| |
|
|
| T |
29144601 |
ctctcacccgaaagagaataaaaaccatcttcataatagggttcattcaactgtaagagtagagatgctccgtcgtaataaggaccacaatgcaaattag |
29144502 |
T |
|
| Q |
513 |
ataaaagattcttgtagaacatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaagg |
612 |
Q |
| |
|
|||| | ||| ||| ||||||||||||||| |||| | |||| |||||||||||| ||||| ||||||||| |||||| ||| | |||||||| ||| |
|
|
| T |
29144501 |
ataagaaattgttgcggaacatgttcatgaaatgagtatcttcaaataagagataccaagatttacgaacgcatccaaatcgcttcaaagatttaagagg |
29144402 |
T |
|
| Q |
613 |
caatttggatagaatggagaaggcaatatcatc |
645 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||| |
|
|
| T |
29144401 |
caatttcgatagaatggataaggcaatatcatc |
29144369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 529 - 653
Target Start/End: Complemental strand, 29123345 - 29123221
Alignment:
| Q |
529 |
gaacatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatg |
628 |
Q |
| |
|
||||||||||||||| |||| | ||||| |||||| ||||||||||||||||| |||||| || |||| |||||||| ||||||||| ||||||||| |
|
|
| T |
29123345 |
gaacatgttcatgaaatgagtatcttcagacaagagagaccatgatttgcgaacggattcaactcgtttaaaagatttaagaggcaattttgatagaatg |
29123246 |
T |
|
| Q |
629 |
gagaaggcaatatcatcagatatat |
653 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
29123245 |
gagaaggcaatatcatcagatatat |
29123221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 530 - 666
Target Start/End: Original strand, 32745720 - 32745856
Alignment:
| Q |
530 |
aacatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatgg |
629 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||| ||| | ||| ||||| |||| |
|
|
| T |
32745720 |
aacatgttcatgaaatgagtattttcagataagagagaccatgatttgcgaacgcattcaaatcgtttaaaagatttaagaggtagttttgataggatgg |
32745819 |
T |
|
| Q |
630 |
agaaggcaatatcatcagatatatcggtggtgctcac |
666 |
Q |
| |
|
|||||||||||||||||| ||||| | |||| ||||| |
|
|
| T |
32745820 |
agaaggcaatatcatcaggtatatagttggtactcac |
32745856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 500 - 651
Target Start/End: Original strand, 29152911 - 29153062
Alignment:
| Q |
500 |
cggtgagaactagataaaagattcttgtagaacatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaa |
599 |
Q |
| |
|
||||||||| | ||||| | ||| ||| ||||||||||||||||||| | ||||||| || ||| |||||||||||||||| |||||||| ||| | |
|
|
| T |
29152911 |
cggtgagaattggataagaaattattgcggaacatgttcatgaagtgatgtttttcagataggagggaccatgatttgcgaacacattcaaaatgcttga |
29153010 |
T |
|
| Q |
600 |
tagatttaaaaggcaatttggatagaatggagaaggcaatatcatcagatat |
651 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
29153011 |
aagatttaagaggcaattttgagagaatggagaaggcaatatcatcagatat |
29153062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 473 - 670
Target Start/End: Original strand, 32973437 - 32973634
Alignment:
| Q |
473 |
agagatgctccatcgtaatacgagcatcggtgagaactagataaaagattcttgtagaacatgttcatgaagtgagggttttcaggtaagagataccatg |
572 |
Q |
| |
|
||||||||||||| |||||| || | || ||||| ||||||| | ||| ||| |||||| |||| |||||| ||||||||| ||||||| |||||| |
|
|
| T |
32973437 |
agagatgctccattgtaataagaaccacgaagagaattagataataaattgttgcagaacactttcacgaagtgttggttttcagataagagagaccatg |
32973536 |
T |
|
| Q |
573 |
atttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggagaaggcaatatcatcagatatatcggtggtgctcaccttt |
670 |
Q |
| |
|
|||| | ||| |||||||| | ||| | |||||||| ||||||||| |||||||| |||||| ||| |||||||| |||| ||||||||||||||| |
|
|
| T |
32973537 |
atttacaaacacattcaaaacgcttgaaagatttaagaggcaattttgatagaatatagaaggaaatttcatcagaaatatatgtggtgctcaccttt |
32973634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 530 - 650
Target Start/End: Original strand, 29149729 - 29149849
Alignment:
| Q |
530 |
aacatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatgg |
629 |
Q |
| |
|
|||||| ||||||||||| || |||| |||||| ||||||||||||||||||||||||||| |||| |||||||| ||||||||| || ||||||| |
|
|
| T |
29149729 |
aacatgctcatgaagtgattattctcagacaagagagaccatgatttgcgaacgcattcaaatcagttaaaagatttaagaggcaattttgagagaatgg |
29149828 |
T |
|
| Q |
630 |
agaaggcaatatcatcagata |
650 |
Q |
| |
|
||||||| |||||||| |||| |
|
|
| T |
29149829 |
agaaggctatatcatcggata |
29149849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 304 - 435
Target Start/End: Original strand, 23216604 - 23216735
Alignment:
| Q |
304 |
atcatcttgatggagacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaattgaaacggtttgcaaatggatttgtgaaatctaattttact |
403 |
Q |
| |
|
||||| || ||||||||||||| ||||||||| |||||||| |||||||| |||||||||| |||||||| ||||||||| |||||||||||| || |
|
|
| T |
23216604 |
atcatattcatggagacaaagtatgccattaacactaccaaccccaaaaatttgaaaattgaattggtttgcatatggatttgagaaatctaatttgacc |
23216703 |
T |
|
| Q |
404 |
ttgttctcaaacctttcaccagaaatagaata |
435 |
Q |
| |
|
|| ||||||||| | || ||||||| |||||| |
|
|
| T |
23216704 |
ttattctcaaacgtctccccagaaagagaata |
23216735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 243 - 650
Target Start/End: Complemental strand, 29299563 - 29299147
Alignment:
| Q |
243 |
tgggaggaatgagcttgattgcatgtgtagatgggttccacaatagagttttgccattata------atcatcttgatggagacaaagtgtgccattaat |
336 |
Q |
| |
|
||||||||| ||||||||||| || |||| |||||||||||||||| ||| | ||| || ||||| |||||||||||||||| ||||| |||| |
|
|
| T |
29299563 |
tgggaggaaggagcttgattgtttgggtagctgggttccacaatagaatttggtcatgatcttcttcatcatattgatggagacaaagtatgccactaat |
29299464 |
T |
|
| Q |
337 |
actaccaaaaccaaaaatacgaaaattgaaacggtttgcaaatggatttgtgaaatctaattttactttgttctcaaacctttcaccagaaatagaatag |
436 |
Q |
| |
|
||||||||||||||||||| || || || | | |||||||||||| |||||||||||| ||||| ||||||||| | ||||||| || ||||||| |
|
|
| T |
29299463 |
gctaccaaaaccaaaaataccaatatcataattttcttcaaatggatttgagaaatctaatttgacttttttctcaaacttctcaccagcaagagaatag |
29299364 |
T |
|
| Q |
437 |
aaaacttc---tttaccaagttctaattcctttactagcagagatgctccatcgtaatacgagcatcggtgagaactagataaaagattcttgtagaaca |
533 |
Q |
| |
|
||||| || || | | || | || ||| | ||||||||||||||||| || || | ||| ||||| | ||||| | ||| || | |||| |
|
|
| T |
29299363 |
aaaacatcagattcattacctttcgactctgttaggatgagagatgctccatcgtagtaagaacgacggagagaattggataagaaattgctgcaaaaca |
29299264 |
T |
|
| Q |
534 |
tgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggagaa |
633 |
Q |
| |
|
|| ||||||||| | |||||| |||||| |||||||||||||||| |||||||| | ||||| |||||||| |||||| || || |||||||| || |
|
|
| T |
29299263 |
tggtcatgaagtcctgattttcaaacaagagagaccatgatttgcgaacacattcaaaacgcttaaaagatttaagaggcaactttgagagaatggaaaa |
29299164 |
T |
|
| Q |
634 |
ggcaatatcatcagata |
650 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
29299163 |
agctatatcatcagata |
29299147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 530 - 630
Target Start/End: Original strand, 23216833 - 23216933
Alignment:
| Q |
530 |
aacatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatgg |
629 |
Q |
| |
|
|||||||||||||| |||| || ||| ||||||| |||||||||||||||| |||||||||||||| | |||||||| ||| || || |||||||||| |
|
|
| T |
23216833 |
aacatgttcatgaaatgagaattatcaattaagagagaccatgatttgcgaacacattcaaatctcttcaaagatttaagaggtaacttcgatagaatgg |
23216932 |
T |
|
| Q |
630 |
a |
630 |
Q |
| |
|
| |
|
|
| T |
23216933 |
a |
23216933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 670
Target Start/End: Complemental strand, 34281126 - 34281023
Alignment:
| Q |
567 |
accatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggagaaggcaatatcatcagatatatcggtggtgctcac |
666 |
Q |
| |
|
||||||||||||||| || ||||| | ||| | |||||||| ||||||||| || ||||| ||||||||||||||||||||||| | | ||||||||| |
|
|
| T |
34281126 |
accatgatttgcgaagacactcaaaacgcttgaaagatttaagaggcaattttgagagaatagagaaggcaatatcatcagatatgtatgcggtgctcac |
34281027 |
T |
|
| Q |
667 |
cttt |
670 |
Q |
| |
|
|||| |
|
|
| T |
34281026 |
cttt |
34281023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 245 - 359
Target Start/End: Complemental strand, 29130796 - 29130682
Alignment:
| Q |
245 |
ggaggaatgagcttgattgcatgtgtagatgggttccacaatagagttttgccattataatcatcttgatggagacaaagtgtgccattaatactaccaa |
344 |
Q |
| |
|
||||||| ||||||||||| || |||| ||| ||||||||| | ||| ||| || | ||||| ||||||||||||| |||||||||||||||||| | |
|
|
| T |
29130796 |
ggaggaaggagcttgattgattgggtagttggattccacaatgaaatttggcctttgttatcataatgatggagacaaaatgtgccattaatactaccga |
29130697 |
T |
|
| Q |
345 |
aaccaaaaatacgaa |
359 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
29130696 |
aaccaaagatacgaa |
29130682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 532 - 646
Target Start/End: Original strand, 21379306 - 21379420
Alignment:
| Q |
532 |
catgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggag |
631 |
Q |
| |
|
|||||||||||| | || ||||||| ||||||| |||||||||| || |||||| |||||| ||| | |||||||| ||| || || |||||||| ||| |
|
|
| T |
21379306 |
catgttcatgaaataagtgttttcaaataagagagaccatgatttacggacgcatccaaatcgcttcaaagatttaagaggtaacttcgatagaatagag |
21379405 |
T |
|
| Q |
632 |
aaggcaatatcatca |
646 |
Q |
| |
|
||| | ||||||||| |
|
|
| T |
21379406 |
aagactatatcatca |
21379420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 29012303 - 29012257
Alignment:
| Q |
316 |
gagacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaat |
362 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
29012303 |
gagacaaagtgtgccgttaatactaccaaaaccaaaaatacggaaat |
29012257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 560 - 653
Target Start/End: Complemental strand, 29130487 - 29130394
Alignment:
| Q |
560 |
aagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggagaaggcaatatcatcagatatat |
653 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||| ||| | |||||||| |||||| || || |||||||||||| |||||||| || ||||| |
|
|
| T |
29130487 |
aagagagaccatgatttacgaacggattcaaatcgcttgaaagatttaagaggcaactttgagagaatggagaagtgaatatcatgaggtatat |
29130394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 29152729 - 29152777
Alignment:
| Q |
298 |
attataatcatcttgatggagacaaagtgtgccattaatactaccaaaa |
346 |
Q |
| |
|
|||||| |||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29152729 |
attatattcattttgatggagacaaagtgtaccattaatactaccaaaa |
29152777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 559 - 653
Target Start/End: Original strand, 34259146 - 34259240
Alignment:
| Q |
559 |
taagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggagaaggcaatatcatcagatatat |
653 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||||| ||| | ||| |||| ||| | |||| |||||| |||||||||||||||| || ||||| |
|
|
| T |
34259146 |
taagagagaccatgatttacgaacgcatccaaatcgctttaaagacttaagaggtagtttgtgtagaatagagaaggcaatatcatgaggtatat |
34259240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 305 - 355
Target Start/End: Original strand, 34279145 - 34279195
Alignment:
| Q |
305 |
tcatcttgatggagacaaagtgtgccattaatactaccaaaaccaaaaata |
355 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
34279145 |
tcatattgatgtagacaaagtgtcccattaatactaccaaaacccaaaata |
34279195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 29123567 - 29123523
Alignment:
| Q |
310 |
ttgatggagacaaagtgtgccattaatactaccaaaaccaaaaat |
354 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
29123567 |
ttgatggagcaagagtgtgccattaatactaccaaaaccaaaaat |
29123523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 529 - 615
Target Start/End: Complemental strand, 29136495 - 29136409
Alignment:
| Q |
529 |
gaacatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaa |
615 |
Q |
| |
|
||||||||||||||| ||| |||||| ||||||| |||||||||||| ||||||||||| | ||| | |||||||| |||||| |
|
|
| T |
29136495 |
gaacatgttcatgaaacgagtattttcaaataagagagaccatgatttgcaaacgcattcaatacgcttgaaagatttaagaggcaa |
29136409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 325 - 355
Target Start/End: Original strand, 32745509 - 32745539
Alignment:
| Q |
325 |
tgtgccattaatactaccaaaaccaaaaata |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32745509 |
tgtgccattaatactaccaaaaccaaaaata |
32745539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 653
Target Start/End: Complemental strand, 13339258 - 13339137
Alignment:
| Q |
532 |
catgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggag |
631 |
Q |
| |
|
||||||||||| || |||||||| |||||| |||||||||||||||||||| ||||| | | |||||||| ||| | |||||||||||| | | |
|
|
| T |
13339258 |
catgttcatgagatgttggttttcaaataagagtgaccatgatttgcgaacgcatcgaaatcggtacaaagatttaagaggaagtttggatagaatcgtg |
13339159 |
T |
|
| Q |
632 |
aaggcaatatcatcagatatat |
653 |
Q |
| |
|
|||| ||| ||||| ||||||| |
|
|
| T |
13339158 |
aaggaaatgtcatctgatatat |
13339137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 304 - 435
Target Start/End: Original strand, 16886 - 17017
Alignment:
| Q |
304 |
atcatcttgatggagacaaagtgtgccattaatactaccaaaaccaaaaatacgaaaattgaaacggtttgcaaatggatttgtgaaatctaattttact |
403 |
Q |
| |
|
||||| || ||||||||||||| ||||||| | |||| ||| |||||||| |||||||||| |||||||| ||||||||| |||||||||||| || |
|
|
| T |
16886 |
atcatattcatggagacaaagtatgccatttacactatcaaccccaaaaatttgaaaattgaattggtttgcatatggatttgagaaatctaatttgacc |
16985 |
T |
|
| Q |
404 |
ttgttctcaaacctttcaccagaaatagaata |
435 |
Q |
| |
|
|| ||||||||||| |||||||||| |||||| |
|
|
| T |
16986 |
ttattctcaaacctctcaccagaaagagaata |
17017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 559 - 652
Target Start/End: Original strand, 17144 - 17237
Alignment:
| Q |
559 |
taagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggagaaggcaatatcatcagatata |
652 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| | |||||||| |||||| || ||||||||||| ||| |||||| |||| |||| |
|
|
| T |
17144 |
taagagagaccatgatttgcaaacgcattcaaatctcttcaaagatttaagaggcaactttgatagaatggataagctaatatcgtcaggtata |
17237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 567 - 645
Target Start/End: Complemental strand, 31788701 - 31788623
Alignment:
| Q |
567 |
accatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggagaaggcaatatcatc |
645 |
Q |
| |
|
||||||||||||| ||||||||||||| || | |||||||| || | ||| |||||||| ||||||||||||||||| |
|
|
| T |
31788701 |
accatgatttgcgtacgcattcaaatcgtttcaaagatttaatggggagttttgatagaatagagaaggcaatatcatc |
31788623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 645
Target Start/End: Complemental strand, 42405897 - 42405814
Alignment:
| Q |
562 |
gagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggagaaggcaatatcatc |
645 |
Q |
| |
|
||||||||||||||| || |||| |||||||| ||| | |||||||| ||||| ||| || | ||| || |||||||||||||| |
|
|
| T |
42405897 |
gagataccatgatttacgtacgctttcaaatcgctttaaagatttaacaggcagtttcgacataatagataaggcaatatcatc |
42405814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 532 - 646
Target Start/End: Original strand, 27174334 - 27174448
Alignment:
| Q |
532 |
catgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggag |
631 |
Q |
| |
|
|||||||||||| |||| |||||| ||| || | ||||||||||| |||||| |||||| ||| | |||||| | ||| ||||| |||||| | ||| |
|
|
| T |
27174334 |
catgttcatgaaaagaggattttcaaataaaagtgatcatgatttgcgtacgcatccaaatcgcttcaaagatttcagaggtaattttgatagatttgag |
27174433 |
T |
|
| Q |
632 |
aaggcaatatcatca |
646 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
27174434 |
aaggtaatatcatca |
27174448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 531 - 645
Target Start/End: Complemental strand, 40548480 - 40548366
Alignment:
| Q |
531 |
acatgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatgga |
630 |
Q |
| |
|
||||| ||||||| |||| || ||||| || | || |||||||||| | | ||||||||||| ||| | |||||||| ||| | ||| |||||||||| |
|
|
| T |
40548480 |
acatggtcatgaactgagagtcttcagataggtgagaccatgatttacttatgcattcaaatcgcttcaaagatttaacaggaagtttttatagaatgga |
40548381 |
T |
|
| Q |
631 |
gaaggcaatatcatc |
645 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40548380 |
aaaggcaatatcatc |
40548366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 33786 - 33829
Alignment:
| Q |
13 |
aatatcaagtatcctccacgagttagttcttaagctatatatct |
56 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| ||||||||||| |
|
|
| T |
33786 |
aatatcaagtttcctccacgagttacttcttaggctatatatct |
33829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 34173 - 34231
Alignment:
| Q |
382 |
atttgtgaaatctaattttactttgttctcaaacctttcaccagaaatagaatagaaaa |
440 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||| ||| ||||| |||||| |||| |
|
|
| T |
34173 |
atttgtgcaatctaattttactttattctcaaacctctcatgagaaagagaatacaaaa |
34231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 532 - 653
Target Start/End: Original strand, 34326 - 34447
Alignment:
| Q |
532 |
catgttcatgaagtgagggttttcaggtaagagataccatgatttgcgaacgcattcaaatctcttaatagatttaaaaggcaatttggatagaatggag |
631 |
Q |
| |
|
||||||||||| || |||||||| |||||| |||||||||| ||||||||| ||||| || | |||||||| ||| | |||||||||||| | | |
|
|
| T |
34326 |
catgttcatgagatgttggttttcaaataagagtgaccatgatttacgaacgcatcgaaatcggttcaaagatttaagagggagtttggatagaattgtg |
34425 |
T |
|
| Q |
632 |
aaggcaatatcatcagatatat |
653 |
Q |
| |
|
|||| |||||| || ||||||| |
|
|
| T |
34426 |
aaggaaatatcgtctgatatat |
34447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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