View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17865_high_2 (Length: 461)
Name: NF17865_high_2
Description: NF17865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17865_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 39902444 - 39902245
Alignment:
| Q |
25 |
gaacctgtgggaaagttgtagtttgaagctttgagaagagattgatgaagttgg-aggacaatagatcaacatcatcaattcctcaatcaatggcaatgg |
123 |
Q |
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| T |
39902444 |
gaacctgtgggaaagttgtagtttgaagctttgagaagagattgatgaagttgttaggactatatatcaacattatgcattcctcaatcaatggcaatgg |
39902345 |
T |
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| Q |
124 |
atgagattgcaagactcaaacacgattgtagcttggccacgggtagatttggtcaaatggatcatacctccaaacaggttgaaaagcaatattgaggtag |
223 |
Q |
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| T |
39902344 |
atgagattgcaagactcaaacacgattgtagcttggccacgggtagatttggtcaaatggatcatacctccaaacaggttgaaaagcaatattgatgtag |
39902245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 276 - 444
Target Start/End: Complemental strand, 39902097 - 39901929
Alignment:
| Q |
276 |
atgaggttgaagatgttgattttaaacttgatgcataaattttatcttattttggttgatttatccaaactcgatgattgagtttactaaaaggcaaact |
375 |
Q |
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| T |
39902097 |
atgaggttgaagatgttgattttaaacttgatgcataaattttatcttattttggttggtttatccaaactcgatgattgagtttactaaaaggcaaact |
39901998 |
T |
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| Q |
376 |
aattattacatttcatgagtaaccacagggttaatcttcataaattgaattgttgatcctattgatgat |
444 |
Q |
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| T |
39901997 |
aattattacatttcatgagttaccacagggttaatcttcataaattgaattgttgatcctattgatgat |
39901929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 254
Target Start/End: Complemental strand, 39902147 - 39902113
Alignment:
| Q |
220 |
gtagaagaggcgtaggctcatgggttcactaaaag |
254 |
Q |
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| T |
39902147 |
gtagaagaggcgtaggctcatgggttcactaaaag |
39902113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 39902012 - 39901979
Alignment:
| Q |
247 |
actaaaaggcaaactaattattacatttcatgag |
280 |
Q |
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| T |
39902012 |
actaaaaggcaaactaattattacatttcatgag |
39901979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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