View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17865_high_3 (Length: 401)
Name: NF17865_high_3
Description: NF17865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17865_high_3 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 75 - 380
Target Start/End: Original strand, 41415605 - 41415910
Alignment:
| Q |
75 |
agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttcta |
174 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
41415605 |
agggggcgtttgtttcccctctacaaaataagttcctgggaatgtaagatgggaactatttattgcaatgtttggtacacatgcatacaaaaaggttcca |
41415704 |
T |
|
| Q |
175 |
aggaattaattatacccggtaattatttttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaacatcc |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41415705 |
aggaattaattatacccggtaattatttttaactatattctcccattttttattcccagcacaaaggatgggaatgacttattcccagcggttaacatcc |
41415804 |
T |
|
| Q |
275 |
attaatatctcaaaagttcatctctaccccttgtaaccgcatggcatcccacgtttctccctacttatgtgtcacgttttctttttgtctttacacaggt |
374 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||| |
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| T |
41415805 |
attaatatctcaaaagttcatttctaccccttgtaaccgcatggcatcccacgtttctacctacttatgtgttacgttttcttcttgtctttacacaggt |
41415904 |
T |
|
| Q |
375 |
tctgct |
380 |
Q |
| |
|
| |||| |
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|
| T |
41415905 |
tttgct |
41415910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 77 - 198
Target Start/End: Complemental strand, 55448037 - 55447916
Alignment:
| Q |
77 |
ggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaag |
176 |
Q |
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|||||||||||||| | |||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||| |
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| T |
55448037 |
ggggcgtttgtttcacttctacaaaataagtttctgagaatgtaagataggaactatttattccaatgtttgatacacatgcataaaaaaaggttataag |
55447938 |
T |
|
| Q |
177 |
gaattaattatacccggtaatt |
198 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
55447937 |
gaattaattatacccggtaatt |
55447916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 185 - 380
Target Start/End: Complemental strand, 55447896 - 55447702
Alignment:
| Q |
185 |
tatacccggtaattatttttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaacatccatt-aatatc |
283 |
Q |
| |
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|||||||| |||||||||| |||||| |||||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||| || |
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| T |
55447896 |
tatacccgataattattttcaactat--tatcccattttttattcccaacccaaaggatgggaatcacttattcccagcggttaacatccattaaatgtc |
55447799 |
T |
|
| Q |
284 |
tcaaaagttcatctctacccctt--gtaaccgcatggcatcccacgtttctccctacttatgtgtcacgttttctttttgtctttacacaggttctgct |
380 |
Q |
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||||| ||||| ||||||| || ||||| |||| || ||||||| ||| |||| ||||||| ||||||||||| || ||||||||||||| |||| |
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| T |
55447798 |
acaaaatttcatttctaccctttaagtaactgcat--caccccacgtctctgcctatttatgtgccacgttttcttcctgcctttacacaggttttgct |
55447702 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 24565335 - 24565440
Alignment:
| Q |
75 |
agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttcta |
174 |
Q |
| |
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|||||| ||||||||| ||||| |||||| ||||| ||||| ||||||||||| |||||||||| |||||||||| ||||||||||||||| ||| | |
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| T |
24565335 |
agggggtgtttgtttcacctctgtaaattagattcctaggaatctaagatgggaattatttattcctatgtttggtatacatgcatacaaaaatattcca |
24565434 |
T |
|
| Q |
175 |
aggaat |
180 |
Q |
| |
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|||||| |
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| T |
24565435 |
aggaat |
24565440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 102 - 380
Target Start/End: Complemental strand, 41418503 - 41418229
Alignment:
| Q |
102 |
ttaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaaggaattaattatacccggtaattatt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| |
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| T |
41418503 |
ttaagttcctgggaatgtaagatgggaactatttattccaatatttggtacacatgcatacaaaaaggttccaagaaattaattatatccggtaattatt |
41418404 |
T |
|
| Q |
202 |
tttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaacatccattaatatctcaaaagttcatctctac |
301 |
Q |
| |
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||||||||||||||||||| ||| ||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
41418403 |
tttaactatattatcccatattttattcccaacagaaaggatgggaatgacttattccaagcagttaacatccattaatatctcaaaagttcatttctac |
41418304 |
T |
|
| Q |
302 |
cccttgtaaccgcatggcatcccacgtttctccctacttatgtgtcacgttttctttttgtctttacacaggttctgct |
380 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
41418303 |
cccttgtaaccgcatggcatcccacattt----ctacttatgtgtcacgttttctttttgtctttacataggttttgct |
41418229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 45355251 - 45355342
Alignment:
| Q |
96 |
tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaaggaattaattat |
187 |
Q |
| |
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|||||||| | |||| ||||| ||||||||||| |||||||||| |||||||||| ||||||| ||||||| ||| ||||||| |||||| |
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| T |
45355251 |
tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaattat |
45355342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 187
Target Start/End: Original strand, 45368992 - 45369083
Alignment:
| Q |
96 |
tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaaggaattaattat |
187 |
Q |
| |
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|||||||| | |||| ||||| ||||||||||| |||||||||| |||||||||| ||||||| ||||||| ||| ||||||| |||||| |
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| T |
45368992 |
tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaattat |
45369083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 191
Target Start/End: Original strand, 49525807 - 49525906
Alignment:
| Q |
92 |
cctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaaggaattaattataccc |
191 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| |||||| || ||||||| || |||| | ||||||| |||||||||||||||||||||| |
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|
| T |
49525807 |
cctctacaaactaagttcccaagaatgtaagatgggaaatatttactcacatgtttgatatacatatacacaaaaacattctaaggaattaattataccc |
49525906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 24560541 - 24560509
Alignment:
| Q |
42 |
ctatattacagggataaaacatcattaaccctt |
74 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
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| T |
24560541 |
ctatattacagggataaaacaccattaaccctt |
24560509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 74 - 180
Target Start/End: Complemental strand, 18902 - 18796
Alignment:
| Q |
74 |
tagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttct |
173 |
Q |
| |
|
||||||| ||||||||| ||||| |||||| ||||| ||||| |||| |||||| |||||||||| |||||||||| ||||||||||||||| ||| |
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| T |
18902 |
tagggggtgtttgtttcacctctgtaaattagattcctaggaatctaaggtgggaattatttattcctatgtttggtatacatgcatacaaaaatattca |
18803 |
T |
|
| Q |
174 |
aaggaat |
180 |
Q |
| |
|
||||||| |
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|
| T |
18802 |
aaggaat |
18796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 6813479 - 6813387
Alignment:
| Q |
75 |
agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaa |
167 |
Q |
| |
|
|||||| ||||||||| ||||| |||||| ||||| ||||| ||||||| ||| |||||||||| |||||||||| ||||||||||||||| |
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|
| T |
6813479 |
agggggtgtttgtttcacctctgtaaattagattcctaggaatctaagatgagaattatttattcctatgtttggtatacatgcatacaaaaa |
6813387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 7968364 - 7968452
Alignment:
| Q |
68 |
aacccttagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgca |
159 |
Q |
| |
|
|||| |||||||||||||||||| ||| |||||||||| |||| |||| ||||||||||| ||||||||| ||||||| |||||||||| |
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| T |
7968364 |
aacctttagggggcgtttgtttcacctatacaaattaaattcc---gaatctaagatgggaataatttattcccatgtttgatacacatgca |
7968452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 36366969 - 36366877
Alignment:
| Q |
75 |
agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaa |
167 |
Q |
| |
|
|||||| ||||||||| |||| |||||| ||||| ||||| ||||||| ||| |||||||||| |||||||||| ||||||||||||||| |
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|
| T |
36366969 |
agggggtgtttgtttcacctcagtaaattagattcctaggaatctaagatgagaattatttattcctatgtttggtatacatgcatacaaaaa |
36366877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 180
Target Start/End: Complemental strand, 46194119 - 46194021
Alignment:
| Q |
82 |
gtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaaggaat |
180 |
Q |
| |
|
||||||||| ||||| |||||| ||| | ||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||| ||| ||||||| |
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|
| T |
46194119 |
gtttgtttcacctctgtaaattagattcttaggaatctaagatgggaattatttattcttatgtttggtatacatgcatacaaaaatattccaaggaat |
46194021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 17902338 - 17902241
Alignment:
| Q |
96 |
tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggtacacatgcatacaaaaaggttctaaggaattaattatacccgg |
193 |
Q |
| |
|
|||||||| | |||| ||||| ||||||||||| |||||||||| |||||||||| ||||||| ||||||| ||| | ||||| |||||| ||||| |
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|
| T |
17902338 |
tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccagggaatgaattattcccgg |
17902241 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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