View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17865_high_4 (Length: 363)

Name: NF17865_high_4
Description: NF17865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17865_high_4
NF17865_high_4
[»] chr4 (4 HSPs)
chr4 (147-358)||(33550243-33550454)
chr4 (147-358)||(26230617-26230829)
chr4 (1-67)||(26230909-26230975)
chr4 (1-67)||(33550533-33550599)
[»] chr7 (2 HSPs)
chr7 (147-358)||(8335378-8335589)
chr7 (4-67)||(8335235-8335298)
[»] chr2 (2 HSPs)
chr2 (147-286)||(4684810-4684949)
chr2 (1-67)||(4684664-4684730)
[»] chr8 (1 HSPs)
chr8 (273-358)||(26632560-26632645)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 147 - 358
Target Start/End: Complemental strand, 33550454 - 33550243
Alignment:
Q  147 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33550454 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 33550355  T
Q  247 gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatg 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  33550354 gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtttggaaaatgatg 33550255  T
Q  347 atattgttggag 358  Q
    ||||||||||||    
T  33550254 atattgttggag 33550243  T

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Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 147 - 358
Target Start/End: Complemental strand, 26230829 - 26230617
Alignment:
Q  147 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26230829 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 26230730  T
Q  247 gtattttagtagcgcaaaatacttccctgaacattataactttaaaaag-attatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgat 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26230729 gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagaattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgat 26230630  T
Q  346 gatattgttggag 358  Q
    |||||||||||||    
T  26230629 gatattgttggag 26230617  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26230975 - 26230909
Alignment:
Q  1 caacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26230975 caacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 26230909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33550599 - 33550533
Alignment:
Q  1 caacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33550599 caacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 33550533  T

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Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 147 - 358
Target Start/End: Original strand, 8335378 - 8335589
Alignment:
Q  147 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 246  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8335378 tgataatgtaccttgattggagtgttgaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 8335477  T
Q  247 gtattttagtagcgcaaaatacttccctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatg 346  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8335478 gtattttagtagcgcaaaaaacttccctgaacattataactttaaaaagattatttccatagtatccaaaaataatgtcaacattgtctggaaaatgatg 8335577  T
Q  347 atattgttggag 358  Q
    ||||||||||||    
T  8335578 atattgttggag 8335589  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 8335235 - 8335298
Alignment:
Q  4 cacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8335235 cacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgatcgggcaacatct 8335298  T

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Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 147 - 286
Target Start/End: Original strand, 4684810 - 4684949
Alignment:
Q  147 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684810 tgataacgtaccttgattggagtgtttaaatcattatcagaaatgtgtatatcaaatataatgacttcctctggatacatgctacgactatgaaaagaag 4684909  T
Q  247 gtattttagtagcgcaaaatacttccctgaacattataac 286  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4684910 gtattttagtagcgcaaaatacttccctgaacattataac 4684949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 4684664 - 4684730
Alignment:
Q  1 caacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684664 caacacaaagttagaagactgcgaaagtcgttctgaagaaaggtcccaaaatgattgggcaacatct 4684730  T

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Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 273 - 358
Target Start/End: Complemental strand, 26632645 - 26632560
Alignment:
Q  273 ctgaacattataactttaaaaagattatttccgtagtatccaaaaataatgtcaacattgtctggaaaatgatgatattgttggag 358  Q
    ||||||||||||||||||||||||||||||   || |||||||||| |||||||||||| || | |||||||||||||||||||||    
T  26632645 ctgaacattataactttaaaaagattatttttatattatccaaaaagaatgtcaacattatcggaaaaatgatgatattgttggag 26632560  T

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