View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17865_high_5 (Length: 354)
Name: NF17865_high_5
Description: NF17865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17865_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 35026318 - 35025993
Alignment:
| Q |
1 |
atgaggtttgggttaaggttgagatgttgtaacttggtttgtattttttgggggatgaagaatgatattttgtgaccnnnnnnngctaatttattggaga |
100 |
Q |
| |
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||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
35026318 |
atgagatttgggtttaggttgagatgttgtaacttggtttgtgtttttttggggatgaagaatgatattttgtgacctttttttgctaatttgttggaga |
35026219 |
T |
|
| Q |
101 |
ggtgaagatatggggtgaagtgtcccatagcaaaccatggaaacattgctatgtgcaaaggaggaagagatcccatggttgatacaagaatgtaatgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35026218 |
ggtgaagatatggggtgaagtgtcccatagcaaaccatggaaacattgctatgtgcaaaggaggaagagatcccatggttgatacaagaatgtaatgaac |
35026119 |
T |
|
| Q |
201 |
tagggacaaagctatataaat-tatatatgtagannnnnnnnnnnnnataagttcaattatattctatgatttttgaaa-tttgatgtgtaatgttgttc |
298 |
Q |
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|||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
35026118 |
tagggacaaagctatacaaatatatatatgtagatgtgtgtgtgtg--taagttcaattatattctatgatttttgaaattttgatgtgtaaggttgttc |
35026021 |
T |
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| Q |
299 |
taccaaaataaaaattgatgtataatgt |
326 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
35026020 |
taccaaaataaaaattgatgtataatgt |
35025993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 35019351 - 35019495
Alignment:
| Q |
19 |
ttgagatgttgtaacttggtttgtattttttgggggatgaagaatgatattttgtgaccnnnnnnngctaatttattggagaggtgaagatatggggtga |
118 |
Q |
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| T |
35019351 |
ttgagatgttgtaacttgttgagtgtgtttttagggatgaagaacgatattttgtgacctcttattgctaatttgttggagaagtgaagatatggagtta |
35019450 |
T |
|
| Q |
119 |
agtgtcccatagcaaaccatggaaacattgctatgtgcaaaggag |
163 |
Q |
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| T |
35019451 |
agtgtcccatagcaaaccatggaaacattgctatgtgcaaaggag |
35019495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 35012325 - 35012475
Alignment:
| Q |
19 |
ttgagatgttgtaacttggtttgtattttttgggggatgaagaatgatattttgtgaccnnnnnnngctaatttattggagaggtgaagatatggggtga |
118 |
Q |
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||||||||||| |||||| | || | |||| ||||||||||| |||||||||||||| |||||||| || |||| ||| ||||||||||||| |
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| T |
35012325 |
ttgagatgttgcaacttgttgagtgtgtttttagggatgaagaacgatattttgtgacctcttattgctaatttgtttgagaagtggagatatggggtga |
35012424 |
T |
|
| Q |
119 |
agtgtcccatagcaaaccatggaaacattgctatgtgcaaaggaggaagag |
169 |
Q |
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| T |
35012425 |
aatgtcccatagcaaaccatggaaacattgatatatgcataggaggaagag |
35012475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 35033273 - 35033163
Alignment:
| Q |
55 |
atgaagaatgatattttgtgaccnnnnnnngctaatttattggagaggtgaagatatggggtgaagtgtcccatagcaaaccatggaaacattgctatgt |
154 |
Q |
| |
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|||||||||||||||||||| || ||||| || || ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
35033273 |
atgaagaatgatattttgtgtcctcttaatgctaacttgtttgagaggtgaagatatggagttaagtgtcccatagcaaaccatggaaacattgctatgt |
35033174 |
T |
|
| Q |
155 |
gcaaaggagga |
165 |
Q |
| |
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| ||||||||| |
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| T |
35033173 |
gtaaaggagga |
35033163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 35009040 - 35008895
Alignment:
| Q |
15 |
aaggttgagatgttgtaacttggtttgtattttttgggggatgaagaatgatattttgtgaccnnnnnnngctaatttattggagaggtgaagatatggg |
114 |
Q |
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|||||||| |||| ||| ||||||||| |||| | ||| |||||||| || |||||||| || |||||||| || ||||| ||||||||||| |
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| T |
35009040 |
aaggttgaattgttctaatttggtttgtgttttcttgggaatgaagaaagagattttgtgtccccttttggctaatttgtttgagagatgaagatatgga |
35008941 |
T |
|
| Q |
115 |
gtgaagtgtcccatagcaaaccatggaaacattgctatgtgcaaag |
160 |
Q |
| |
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|| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35008940 |
gttaagtgtcccattgcaaaccatggaaacattgctatgtgcaaag |
35008895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 34998837 - 34998980
Alignment:
| Q |
19 |
ttgagatgttgtaacttggtttgtattttttgggggatgaagaatgatattttgtgaccnnnnnnngctaatttattggagaggtgaagatatggggtga |
118 |
Q |
| |
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|||||||||||||||||| | || | |||| |||||||| |||||||||||||||||| ||||||| || |||||| | | | |||| || |
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| T |
34998837 |
ttgagatgttgtaacttgttgagtgtgtttttggggatgatgaatgatattttgtgacctcttattactaatttgttagagaggcggataaatggagttg |
34998936 |
T |
|
| Q |
119 |
agtgtcccatagcaaaccatggaaacattgctatgtgcaaagga |
162 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34998937 |
agtgtcccatagcaaaccatggaaacattgctatgtgcaaagga |
34998980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 35036879 - 35037038
Alignment:
| Q |
1 |
atgaggtttgggttaaggttgagatgttgtaacttggtttgtattttttgggggatgaagaatgatattttgtgaccnnnnnnngctaatttattggaga |
100 |
Q |
| |
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||||| ||||| | |||||||| |||| ||| ||||||||| |||| ||| |||||||| || |||||||| || |||||||| || |||| |
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| T |
35036879 |
atgagatttggataaaggttgaattgttctaatttggtttgtgttttcgtgggaatgaagaaagagattttgtgtccccttttggctaatttgtttgaga |
35036978 |
T |
|
| Q |
101 |
ggtgaagatatggggtgaagtgtcccatagcaaaccatggaaacattgctatgtgcaaag |
160 |
Q |
| |
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| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35036979 |
gatgaagatatggagttaagtgtcccattgcaaaccatggaaacattgctatgtgcaaag |
35037038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 36288603 - 36288447
Alignment:
| Q |
4 |
aggtttgggttaaggttgagatgttgtaacttggtttgtattttttgggggatgaagaatgatattttgtgaccnnnnnnngctaatttattggagaggt |
103 |
Q |
| |
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|||||||||| |||||||| | || ||||||||||||| |||| | |||||||||||| || |||||| || |||||| | || ||||||| |
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| T |
36288603 |
aggtttgggtaaaggttgaatttttctaacttggtttgtgttttcttggggatgaagaaagaggttttgtctccctttttggctaatatgtttgagaggt |
36288504 |
T |
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| Q |
104 |
gaagatatggggtgaagtgtcccatagcaaaccatggaaacattgctatgtgcaaag |
160 |
Q |
| |
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|||||||||| | | ||||||||| |||||||||||| |||||||||||||||||| |
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| T |
36288503 |
gaagatatggaattaggtgtcccattgcaaaccatggagacattgctatgtgcaaag |
36288447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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