View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17865_high_6 (Length: 352)
Name: NF17865_high_6
Description: NF17865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17865_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 37704796 - 37704454
Alignment:
| Q |
1 |
gaagaagtctaagtctccgattctaaatacaattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704796 |
gaagaagtctaagtctccgattctaaatacaattaatgttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatg |
37704697 |
T |
|
| Q |
101 |
aatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704696 |
aatttgttatcttatcacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaaca |
37704597 |
T |
|
| Q |
201 |
ccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704596 |
ccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacg |
37704497 |
T |
|
| Q |
301 |
tagactcaatttgcaaacaatctaataagtcaacctttttggt |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704496 |
tagactcaatttgcaaacaatctaataagtcaacctttttggt |
37704454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 37699327 - 37698974
Alignment:
| Q |
1 |
gaagaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtatttttaagcacattactcactgtgattgctact |
94 |
Q |
| |
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||||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| | ||||||||||| |
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| T |
37699327 |
gaagaagtctaagtctccgttgctaaatacaattaatgttgttattattttcttcattttaggtgtatttttaagcaaattactcattctgattgctact |
37699228 |
T |
|
| Q |
95 |
taaatgaatttgttatcttat---cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagt |
190 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||| |||||||| ||| ||| ||||| ||||||||| |
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| T |
37699227 |
taaatgaatttgttatcttattatcacaacttgcaataagattccaactttagtgctaattacgttcgaaaagtcttggttttccaagatgttatttagt |
37699128 |
T |
|
| Q |
191 |
ttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaata |
290 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| |
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| T |
37699127 |
ttaatgaacaccaaacttttctatgattgttactgaattaatattgttgccaaatgtcatatcagtatacggttatgaaaagcacccccaacacaaaata |
37699028 |
T |
|
| Q |
291 |
agggaatacgtagactcaa--tttgcaaacaatctaataagtcaacctttttgg |
342 |
Q |
| |
|
||||||||| ||||||||| |||| |||||||||||||| |||| |||||||| |
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|
| T |
37699027 |
agggaatacctagactcaatgtttgtaaacaatctaataactcaaactttttgg |
37698974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 39 - 343
Target Start/End: Complemental strand, 37437823 - 37437520
Alignment:
| Q |
39 |
ttattttcttcatttcaggtgtatttttaagcacattactcactgtgattgctacttaaatgaatttgttatcttat---cacaacttgaaataagattc |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
37437823 |
ttattttcttcatttcaggtgtatttttaagcaaattactcattctgattgctacttaaatgaatttgttatcttattatcacaacttgcaataagattc |
37437724 |
T |
|
| Q |
136 |
caactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatat |
234 |
Q |
| |
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|||||| ||||||||||||| |||||||| ||||||| || || |||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
37437723 |
caactt----gctaattacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatat |
37437628 |
T |
|
| Q |
235 |
tgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaataagggaatacgtagactcaatttgcaaacaatctaataagtcaac |
334 |
Q |
| |
|
||||||||| |||||||||| |||| | |||||||||||| ||||| | |||| ||||||||| |||||| |||||| |||||||||||||||||| |
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| T |
37437627 |
tgttgccaattgtcatatcactatacggttatgaaaagca-ccccacattaaaacaagggaatagctagactgaatttgtaaacaatctaataagtcaga |
37437529 |
T |
|
| Q |
335 |
ctttttggt |
343 |
Q |
| |
|
||||||||| |
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|
| T |
37437528 |
ctttttggt |
37437520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 95 - 343
Target Start/End: Complemental strand, 37698864 - 37698636
Alignment:
| Q |
95 |
taaatgaatttgttatcttatcacaacttgaaataagattccaactttcgtgc----taattacgttcaaaaagtc-tggtcttcgaagatattatttag |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| |||||||| |||||||| ||||| |||||||| |
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|
| T |
37698864 |
taaatgaatttgttatcttatcacaacttgcaataagattccaactttagtgctaattaattacgttaaaaaagtcttggtcttccaagatgttatttag |
37698765 |
T |
|
| Q |
190 |
tttaatgaacaccaaacttttctatgatggttactgaattaatattgttgccaaatgtcatatcagtatatgtttatgaaaagcacccccaaaacaaaat |
289 |
Q |
| |
|
||||| ||||||||||||||| |||||| | |||||||||||||||| |||||||||| |||| | | |||||||| |
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|
| T |
37698764 |
tttaacgaacaccaaacttttgtatgattg--------ttaatattgttgccaattgtcatatcactatacggt-----------------caacaaaat |
37698690 |
T |
|
| Q |
290 |
aagggaatacgtagactcaatttgcaaacaatctaataagtcaacctttttggt |
343 |
Q |
| |
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|||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
37698689 |
aagggaatacttagactcaatttgtaaacaatctaataagtcaaactttttggt |
37698636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 215
Target Start/End: Original strand, 16840882 - 16841109
Alignment:
| Q |
4 |
gaagtctaagtctccgattctaaatacaattaatgtt------attttcttcatttcaggtgtat----ttttaagcacattactcactgtgattgctac |
93 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| ||||||||| |||| ||| |||||||| ||| |
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|
| T |
16840882 |
gaagtctaagtctccgcttctaaatacatttaatgttgttattattttcttcatttcaggtgtatatatttttaagcaaattattcattgtgattggtac |
16840981 |
T |
|
| Q |
94 |
ttaaatgaatttgttatcttat------cacaacttgaaataagattccaactttcgtgctaattacgttcaaaaagtct-ggtcttcgaagatattatt |
186 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||| |
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|
| T |
16840982 |
ttaaatgaatttgttatcttattaatatcacaacttgcaataagattccaactta-gtgctaattacgttcaaaaagtcttggtcttccaagattttatt |
16841080 |
T |
|
| Q |
187 |
tagtttaatgaacaccaaacttttctatg |
215 |
Q |
| |
|
||||||| | |||||||||||||| |||| |
|
|
| T |
16841081 |
tagtttattaaacaccaaacttttgtatg |
16841109 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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