View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17866_high_12 (Length: 340)
Name: NF17866_high_12
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17866_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 36849930 - 36849761
Alignment:
| Q |
1 |
aatgatcacgagtagaacttaataccttgctttcgctacaaaatttcactcaaatttgtgtgtttcacatattaaacgtcttaaaataacattgcttgaa |
100 |
Q |
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| T |
36849930 |
aatgatcacgagtagaacttaataccttgctttcgctacaaaatttcactcaaatttgtgtgtttcacatattaaacgtcttaaaataacattgcttgaa |
36849831 |
T |
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| Q |
101 |
atcctctaattgccacagaaaaatccattgaaacaaaagtttatttcacgccattgcctagcagaatctc |
170 |
Q |
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| T |
36849830 |
atcctctaattgccacagaaaaatccattgaaacaaaagtttatttcacgccattgcctagcagaatctc |
36849761 |
T |
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Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 36849708 - 36849609
Alignment:
| Q |
225 |
caacctgcaccacgaaagactgatgagcaaaacattcttcccgtggccttctataagcgattaaaatattcgaatcatacaaacccttgtcccatgaaac |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36849708 |
caacctgcaccacgaaagactgatgagcaaaacattcttcccgtggccttctataagcgattaaaatattcgaatcatacaaacccttgtcccatgaaac |
36849609 |
T |
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