View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17866_high_18 (Length: 249)

Name: NF17866_high_18
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17866_high_18
NF17866_high_18
[»] chr7 (2 HSPs)
chr7 (16-249)||(25328009-25328242)
chr7 (16-224)||(25322146-25322354)
[»] chr4 (1 HSPs)
chr4 (16-228)||(5219146-5219358)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 25328009 - 25328242
Alignment:
Q  16 atatgatgagctgccaaatatggctcagttgaggaatttccccttgagcagttagctacaaaagaaggagaacacctctgaggtggtgccattccaatat 115  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  25328009 atatgatgagctaccaaatatggctcagctgaggaatttccccttgagcagttagctgcaaaggaaggagaacacctctgaggtggtgccattccaatat 25328108  T
Q  116 catagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcagcatatgatgtgaa 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25328109 catagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcaacatatgatgtgaa 25328208  T
Q  216 atctttcctgcaagcacacatatatagatatgtt 249  Q
    ||||||||||||||||||||||||||||||||||    
T  25328209 atctttcctgcaagcacacatatatagatatgtt 25328242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 25322146 - 25322354
Alignment:
Q  16 atatgatgagctgccaaatatggctcagttgaggaatttccccttgagcagttagctacaaaagaaggagaacacctctgaggtggtgccattccaatat 115  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    | |||| ||    
T  25322146 atatgatgagctaccaaatatggctcagttgaggaatttccccttgagcatttagctgcaaaagaaggagaacacctctgaggtggtaagttgccaagat 25322245  T
Q  116 catagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcagcatatgatgtgaa 215  Q
    |||| ||| ||| ||||||||||||| ||||||||||||| |||||||||||||||| ||| ||||||||| |||||||||||||| ||||||  |||||    
T  25322246 cataaccaaacaatgcatacacattgccctcattcaccgtagtccaatacttaactctatcgccaaattctttgaagcacacatcaacatatgcagtgaa 25322345  T
Q  216 atctttcct 224  Q
    |||||||||    
T  25322346 atctttcct 25322354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 5219146 - 5219358
Alignment:
Q  16 atatgatgagctgccaaatatggctcagttgaggaatttccccttgagcagttagctacaaaagaaggagaacacctctgaggtggtgccattccaatat 115  Q
    ||||||||||   ||||||||||||||||||| ||||||||  | |||||||||  || |   || | ||||||||| ||||| |||   | |||   ||    
T  5219146 atatgatgagtaaccaaatatggctcagttgaagaatttcctttggagcagttaaatataggggatgaagaacacctttgaggaggtaaaaatcctgcat 5219245  T
Q  116 catagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcagcatatgatgtgaa 215  Q
    |||||||   ||||| | |||||||  ||||||| || ||||||||||  ||||||| ||| ||||| ||||| ||||| ||||| ||||||| ||||||    
T  5219246 catagccccccattgaacacacattcccctcatttactgtggtccaatgtttaactctatccccaaactctctaaagcatacatctgcatatgctgtgaa 5219345  T
Q  216 atctttcctgcaa 228  Q
    |||||| ||||||    
T  5219346 atcttttctgcaa 5219358  T

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