View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17866_high_3 (Length: 480)
Name: NF17866_high_3
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17866_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 465
Target Start/End: Complemental strand, 34719125 - 34718675
Alignment:
| Q |
16 |
aaaacatatcaggcagtgcaactgggataggatatcccagctatggttgatggttcctagaacctacatcata-catatgtatacagcgacatttcaagt |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34719125 |
aaaacatatcaggcagtgcaactgggataggatatcccagctatggttgatggttcctagaacctacatcatatcatatgtatacagcgacatttcaagt |
34719026 |
T |
|
| Q |
115 |
gttgttggcaaacagttgtcaggtgtataacatgtaactgaaccaactaa-tttccgaaagaaatgcaggtcctatttagcacttaacattacgttgatt |
213 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34719025 |
gttgttagcaaacagttgtcaggtgtataacatgtaactgaaccaactaaatttccgaaagaaatgcaggtcctatttagcacttaacattacgttgatt |
34718926 |
T |
|
| Q |
214 |
ccacagtagtcttaa-gacggagaaaacaatattgcttcatatttattcaaaggggaagatgtagaggagaacccaattgctttgtgaaaattcttgagt |
312 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34718925 |
ccacagtagtcttaaagacggagaaaacaatattgcttcatatttattcaaaggggaagatgtagaggagaacccaattgctttgtgaaaattcttgagt |
34718826 |
T |
|
| Q |
313 |
tcctctcttgccaaatgaaattgatatatgctcttgttgggtatggctcatatgtactgacaagtttgttacgacattattgattgaaagataaggaaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34718825 |
tcctctcttgccaaatgaaattgatatatgctcttgttgggtatggct--tatgtactgacaagtttgttacgacattattgattgaaagataaggaaat |
34718728 |
T |
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| Q |
413 |
gtattacaagagaatctctcctgtaaccccagagctatgctcctcaaaggaat |
465 |
Q |
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| T |
34718727 |
gtattacacgagaatctctcctgtaaccccggagctatgctcctcaaaggaat |
34718675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 465
Target Start/End: Complemental strand, 6422705 - 6422657
Alignment:
| Q |
417 |
tacaagagaatctctcctgtaaccccagagctatgctcctcaaaggaat |
465 |
Q |
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| T |
6422705 |
tacaagaggatctctcctgtaaccctagagcagtgctcctcagaggaat |
6422657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 465
Target Start/End: Complemental strand, 19942231 - 19942155
Alignment:
| Q |
388 |
attattgattgaaagataaggaaatgtattacaagagaatctctcctgtaaccccagagctatgctcctcaaaggaat |
465 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||| |||||| ||| |||||||||| |||||| |
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| T |
19942231 |
attattgattgaaagataaggaaatgtattactagaggatctctcctg-gaccccaaagcaatgctcctcagaggaat |
19942155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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