View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17866_high_5 (Length: 472)
Name: NF17866_high_5
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17866_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 36618511 - 36618795
Alignment:
| Q |
18 |
caatctagcataatccaatttcccacatttggcatacatgtcaatcaatgcagtacccaccatcacatcattcatggcaaagccatgtttgaaagcgtgt |
117 |
Q |
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| T |
36618511 |
caatctagcataatccaatttcccacatttggcatacatgtcaatcaatgcagtacccaccatcacatcattcatggcaaagccatgtttgaaagcgtgt |
36618610 |
T |
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| Q |
118 |
gtgtgtaatgcagctccaaaggtgatgctggttttggagggagagtgggcacaagcagagaggagagtgatgagagtgatgtgattgggttcgacttcgg |
217 |
Q |
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| T |
36618611 |
gtgtgtaatgcagctccaaaggtgatgctggttttggagggagagtgggcacaagcagagaggagagtgatgagggtgatgtgattgggttcgacttcgg |
36618710 |
T |
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| Q |
218 |
cttcgagcatttggatgaattcggaagatgctttgaggaaattgttatttttgcagtggtgagaaattgaggatgtccatgatac |
302 |
Q |
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| T |
36618711 |
cttcgagcatttggatgaattcggaagctgctttgaggaaattgttatttttgcagtggtgagaaattgaggatgtccatgatac |
36618795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 36652264 - 36652548
Alignment:
| Q |
18 |
caatctagcataatccaatttcccacatttggcatacatgtcaatcaatgcagtacccaccatcacatcattcatggcaaagccatgtttgaaagcgtgt |
117 |
Q |
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| T |
36652264 |
caatctagcataatccaatttcccacatttggcatacatgtcaatcaatgcagtacccaccatcacatcattcatggcaaagccatgtttgaaagcgtgt |
36652363 |
T |
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| Q |
118 |
gtgtgtaatgcagctccaaaggtgatgctggttttggagggagagtgggcacaagcagagaggagagtgatgagagtgatgtgattgggttcgacttcgg |
217 |
Q |
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| T |
36652364 |
gtgtgtaatgcagctccaaaggtgatgctggttttggagggagagtgggcacaagcagagaggagagtgatgagggtgatgtgattgggttcgacttcgg |
36652463 |
T |
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| Q |
218 |
cttcgagcatttggatgaattcggaagatgctttgaggaaattgttatttttgcagtggtgagaaattgaggatgtccatgatac |
302 |
Q |
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| T |
36652464 |
cttcgagcatttggatgaattcggaagctgctttgaggaaattgttatttttgcagtggtgagaaattgaggatgtccatgatac |
36652548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 369 - 465
Target Start/End: Original strand, 36618862 - 36618958
Alignment:
| Q |
369 |
agaaaatgtagagggagggtgaatttgtggaggttgttttggagggtcagggtggcgtgttggggttgcaatgcacgtagtaaggatcattcttctc |
465 |
Q |
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| T |
36618862 |
agaaaatgtagagggagggtgaatttgtggaggttgttttggagggtcagggtggtgtgttggggttgcaatgcacgtagtaaggatcattcttctc |
36618958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 369 - 465
Target Start/End: Original strand, 36652615 - 36652711
Alignment:
| Q |
369 |
agaaaatgtagagggagggtgaatttgtggaggttgttttggagggtcagggtggcgtgttggggttgcaatgcacgtagtaaggatcattcttctc |
465 |
Q |
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| T |
36652615 |
agaaaatgtagagggagggtgaatttgtggaggttgttttggagggtcagggtggtgtgttggggttgcaatgcacgtagtaaggatcattcttctc |
36652711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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