View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17866_low_13 (Length: 338)
Name: NF17866_low_13
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17866_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 54957321 - 54957017
Alignment:
| Q |
16 |
ggaaagaatatcactccaccttttgatcaattaagctaaccaggaggactgtatgctatgcataaggtaaaatacagattcactcccgtagaaattgatt |
115 |
Q |
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| T |
54957321 |
ggaaagaatatcactccaccttttgatcaattaagctaaccaggaggactgtatgctatgcataaggtaaaatacagattcactcccgtagaaattgatt |
54957222 |
T |
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| Q |
116 |
tgaagacataactttcagaaatacatttttctttagtgtaagaaaaactgagaaataaatggcaatatcttttttgcatcttagactgttcaaaactatc |
215 |
Q |
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| T |
54957221 |
tgaagacataactttcagaaatacatttttctttagtgtaagaaaaactgagaaataaatgccaatatcttttttgcatcttagactgttcaaaactatc |
54957122 |
T |
|
| Q |
216 |
ctagatgatctgatttgtttcctagattagttaggatcttcgtaatcattaggcatatcataacatgtaaacaggaagnnnnnnngtcagatttattgta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
54957121 |
ctagatgatctgatttgtttcctagattagttaggatctttgtaatcattaggcatatcataacatgtaaacaggaagaaaaaaagtcagatttattgta |
54957022 |
T |
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| Q |
316 |
ttaac |
320 |
Q |
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||||| |
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| T |
54957021 |
ttaac |
54957017 |
T |
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