View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17866_low_17 (Length: 303)
Name: NF17866_low_17
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17866_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 5 - 289
Target Start/End: Complemental strand, 24692935 - 24692636
Alignment:
| Q |
5 |
acatcatcaacctccaccttcactcaactcaattataacctcatgtgcacctcaagattaccatggtactttctttctctagaaaactcacataaatatt |
104 |
Q |
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| T |
24692935 |
acatcatcaacctccaccatcactcaactcaattataacctcatgtgcacctcaagattaccatggtactttctttctctagaaaactcacataaatatt |
24692836 |
T |
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| Q |
105 |
att---------------atgcagccgatgcagcctaagtcgcaattgcgttgttgttaccacaacattaaaacctattatgtcgtggcacagatcacgg |
189 |
Q |
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| T |
24692835 |
attgagaattgtcgttaaatgtagccgatgcagcctaagtcgcaattgcgttgttgttaccacaacattaaaacctattatgtcgtggcacagatcgcgg |
24692736 |
T |
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| Q |
190 |
tcgcagacctttatttaaatctagcaatgtaatattaatttttatgagatgaaagtaataatatattttaaatattgatgcaggaggaggagtatccttt |
289 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
24692735 |
tcgcagacctttatttaaatctaccaatgtaatattaatttttatgagatgaaagtaataacatattttaaatattgatgcaggaggaggagtgtccttt |
24692636 |
T |
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