View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17866_low_2 (Length: 641)
Name: NF17866_low_2
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17866_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 9e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 395 - 570
Target Start/End: Complemental strand, 5935214 - 5935039
Alignment:
| Q |
395 |
ttcatgttgttacagccagaccacaatatatcaggaccatttgatttgaatcaatgactaagattataaaactaatgtgtaacctggattgtccgatctc |
494 |
Q |
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| T |
5935214 |
ttcatgttgttacagccagacaacaatatatcaggaccatttgatttgaatcaatgactaagattataaaattaatgtgtaatttggattatccgatctc |
5935115 |
T |
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| Q |
495 |
atatcaatgatcgtgattgaataatgtataaaaccgtgtgtttttctatagcaacaaaaccacatccgtaactcta |
570 |
Q |
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| T |
5935114 |
atatcaatgatcgtgattgaataatgtataaaaccgtatgtttttttatagcaacaaaaccacatccgtaactcta |
5935039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 5935311 - 5935233
Alignment:
| Q |
19 |
gaggatggggatatatttgttggtctacaaggaggaagaccacgacgaactcaagttttacgaataattctatctgttt |
97 |
Q |
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| T |
5935311 |
gaggatgggaatatatttgttggtctacaaggaggaagaccacgacgaactgaagttttacgaataattctatatgttt |
5935233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 23629374 - 23629338
Alignment:
| Q |
229 |
tatgtttggctttcaaaaatttaaattgattatggag |
265 |
Q |
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| T |
23629374 |
tatgtttggctttcaaaaaggtaaattgattatggag |
23629338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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