View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17866_low_21 (Length: 249)
Name: NF17866_low_21
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17866_low_21 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 25328009 - 25328242
Alignment:
| Q |
16 |
atatgatgagctgccaaatatggctcagttgaggaatttccccttgagcagttagctacaaaagaaggagaacacctctgaggtggtgccattccaatat |
115 |
Q |
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| T |
25328009 |
atatgatgagctaccaaatatggctcagctgaggaatttccccttgagcagttagctgcaaaggaaggagaacacctctgaggtggtgccattccaatat |
25328108 |
T |
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| Q |
116 |
catagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcagcatatgatgtgaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25328109 |
catagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcaacatatgatgtgaa |
25328208 |
T |
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| Q |
216 |
atctttcctgcaagcacacatatatagatatgtt |
249 |
Q |
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| T |
25328209 |
atctttcctgcaagcacacatatatagatatgtt |
25328242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 25322146 - 25322354
Alignment:
| Q |
16 |
atatgatgagctgccaaatatggctcagttgaggaatttccccttgagcagttagctacaaaagaaggagaacacctctgaggtggtgccattccaatat |
115 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |||| || |
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| T |
25322146 |
atatgatgagctaccaaatatggctcagttgaggaatttccccttgagcatttagctgcaaaagaaggagaacacctctgaggtggtaagttgccaagat |
25322245 |
T |
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| Q |
116 |
catagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcagcatatgatgtgaa |
215 |
Q |
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| T |
25322246 |
cataaccaaacaatgcatacacattgccctcattcaccgtagtccaatacttaactctatcgccaaattctttgaagcacacatcaacatatgcagtgaa |
25322345 |
T |
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| Q |
216 |
atctttcct |
224 |
Q |
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| T |
25322346 |
atctttcct |
25322354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 5219146 - 5219358
Alignment:
| Q |
16 |
atatgatgagctgccaaatatggctcagttgaggaatttccccttgagcagttagctacaaaagaaggagaacacctctgaggtggtgccattccaatat |
115 |
Q |
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|||||||||| ||||||||||||||||||| |||||||| | ||||||||| || | || | ||||||||| ||||| ||| | ||| || |
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| T |
5219146 |
atatgatgagtaaccaaatatggctcagttgaagaatttcctttggagcagttaaatataggggatgaagaacacctttgaggaggtaaaaatcctgcat |
5219245 |
T |
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| Q |
116 |
catagccatacattgcatacacattgacctcattcaccgtggtccaatacttaactcgatcaccaaattctctgaagcacacatcagcatatgatgtgaa |
215 |
Q |
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||||||| ||||| | ||||||| ||||||| || |||||||||| ||||||| ||| ||||| ||||| ||||| ||||| ||||||| |||||| |
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| T |
5219246 |
catagccccccattgaacacacattcccctcatttactgtggtccaatgtttaactctatccccaaactctctaaagcatacatctgcatatgctgtgaa |
5219345 |
T |
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| Q |
216 |
atctttcctgcaa |
228 |
Q |
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|||||| |||||| |
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| T |
5219346 |
atcttttctgcaa |
5219358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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