View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17866_low_22 (Length: 239)
Name: NF17866_low_22
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17866_low_22 |
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| [»] scaffold0867 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 19698350 - 19698127
Alignment:
| Q |
1 |
caatgaatcccaatcacaataattcttggtccaactacttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaa |
100 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19698350 |
caatgaaccccaaccacaataattcttggtccaactacttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaa |
19698251 |
T |
|
| Q |
101 |
tgcatccaataacccaaacccacgtcctaacctaaattttcaaaatcatacttttatcccaaacccacacattggaaattatccatatcatacaccacct |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19698250 |
tgcatccaataacccaaacccacatcctaacctaaattttcaaaatcatgcttttatcccaaacccacacattggaaattatccatatcatacaccacct |
19698151 |
T |
|
| Q |
201 |
tacccatatcactatcaacatttt |
224 |
Q |
| |
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|| ||||||||||||||||||||| |
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| T |
19698150 |
tatccatatcactatcaacatttt |
19698127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 32603929 - 32603706
Alignment:
| Q |
1 |
caatgaatcccaatcacaataattcttggtccaactacttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaa |
100 |
Q |
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||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32603929 |
caatgaaccccgaccacaataattcttggtccaactacttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaa |
32603830 |
T |
|
| Q |
101 |
tgcatccaataacccaaacccacgtcctaacctaaattttcaaaatcatacttttatcccaaacccacacattggaaattatccatatcatacaccacct |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32603829 |
tgcatccaataacccaaacccacatcctaacctaaattttcaaaatcatgcttttatcccaaacccacacattggaaattatccatatcatacaccacct |
32603730 |
T |
|
| Q |
201 |
tacccatatcactatcaacatttt |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
32603729 |
tacccatatcactatcaacatttt |
32603706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 19793334 - 19793109
Alignment:
| Q |
1 |
caatgaatcccaatcacaataattcttggtccaactacttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaa |
100 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19793334 |
caatgaaccccaaccacaataattcttggtccaactacttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaa |
19793235 |
T |
|
| Q |
101 |
tgcatccaataacccaaacccacgtcctaacctaaattttcaaaatcatacttttatcccaaacccacacattggaaattatccatatcatacaccacct |
200 |
Q |
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|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19793234 |
tgcatccaataacccaaacccacatcctaacctaaattttcaaaatcatgcttttatcccaaacccacacattggaaattatccatatcatacaccacct |
19793135 |
T |
|
| Q |
201 |
tacccatatca--ctatcaacatttt |
224 |
Q |
| |
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||||||||||| ||||||||||||| |
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|
| T |
19793134 |
tacccatatcactctatcaacatttt |
19793109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 9679865 - 9680088
Alignment:
| Q |
1 |
caatgaatcccaatcacaataattcttggtccaactacttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaa |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9679865 |
caatgaaccccaaccacaataattcttggtccaactacttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaa |
9679964 |
T |
|
| Q |
101 |
tgcatccaataacccaaacccacgtcctaacctaaattttcaaaatcatacttttatcccaaacccacacattggaaattatccatatcatacaccacct |
200 |
Q |
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|
||||||||||||||||||| ||| || ||| | ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
9679965 |
tgcatccaataacccaaactcacatcataaaccaaattttcaaaatcatatttttatcccaaatccacacattggaaattatccatatcatacaccacgt |
9680064 |
T |
|
| Q |
201 |
tacccatatcactatcaacatttt |
224 |
Q |
| |
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|| ||||| ||||||||||||||| |
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| T |
9680065 |
tatccataccactatcaacatttt |
9680088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 46822394 - 46822617
Alignment:
| Q |
1 |
caatgaatcccaatcacaataattcttggtccaactacttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaa |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46822394 |
caatgaaccccaaccacaataattcttggtccaactacttgcaaaatggtggcattcctccatgcatccaaaatcaacaaaatgtctcctactttgaaaa |
46822493 |
T |
|
| Q |
101 |
tgcatccaataacccaaacccacgtcctaacctaaattttcaaaatcatacttttatcccaaacccacacattggaaattatccatatcatacaccacct |
200 |
Q |
| |
|
||||||||||||||||||| ||| || ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46822494 |
tgcatccaataacccaaactcacatcataaatcaaattttcaaaatcatacttttatcccaaatccacacattggaaattatccatatcatacaccacct |
46822593 |
T |
|
| Q |
201 |
tacccatatcactatcaacatttt |
224 |
Q |
| |
|
|| |||| ||||||||||||||| |
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| T |
46822594 |
tattcataccactatcaacatttt |
46822617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 20175353 - 20175307
Alignment:
| Q |
137 |
ttttcaaaatcatacttttatcccaaacccacacattggaaattatc |
183 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
20175353 |
ttttcaaaatcatgcttttatcccaaatccacacattggaaattatc |
20175307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0867 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 344 - 388
Alignment:
| Q |
167 |
acacattggaaattatccatatcatacaccaccttacccatatca |
211 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |||||||||| ||||| |
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|
| T |
344 |
acactttggaaattatccatgtcatacatcaccttacccctatca |
388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 9217391 - 9217355
Alignment:
| Q |
74 |
tcaacaaaatgtctcctactttgaaaatgcatccaat |
110 |
Q |
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||||||||||||||| | ||||||||||||||||||| |
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| T |
9217391 |
tcaacaaaatgtctcatcctttgaaaatgcatccaat |
9217355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 22243706 - 22243750
Alignment:
| Q |
167 |
acacattggaaattatccatatcatacaccaccttacccatatca |
211 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |||||||||| ||||| |
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|
| T |
22243706 |
acactttggaaattatccatgtcatacatcaccttacccctatca |
22243750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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