View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17866_low_23 (Length: 238)
Name: NF17866_low_23
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17866_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 25328245 - 25328465
Alignment:
| Q |
1 |
ccataataaaaccctttcttaattttgtctatttgtcatttatttcaatctattacaatatggaaactcaaatagaaatttaaagtatgggaaagttttg |
100 |
Q |
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| T |
25328245 |
ccataataaaactctttgttaattttgtgtatttgtcatttatttcaatctattacaatatggaaactcaaatagaaatttaaagtatgggaaagttttg |
25328344 |
T |
|
| Q |
101 |
gtaccatacacaannnnnnngctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25328345 |
gtaccatacacaatttttttgctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
25328444 |
T |
|
| Q |
201 |
gaaaatgaaatatattagagc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
25328445 |
gaaaatgaaatatattagagc |
25328465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 200
Target Start/End: Original strand, 25322609 - 25322686
Alignment:
| Q |
123 |
taacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
200 |
Q |
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||||||||||| |||| |||||||||||| |||||||||||||| || || ||||||||||||| || |||||||| |
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| T |
25322609 |
taacccatcctccatattcatcctcaagtttttgtggtagatcccaatgatgtaatgtaacatgtggttggattccta |
25322686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 5219785 - 5219863
Alignment:
| Q |
122 |
ctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
200 |
Q |
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| T |
5219785 |
ctaacccatcctccatattcatcttcaagtgcttgtggtagatcccagtgatttaaagtaacatgtggttggattccta |
5219863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 39641993 - 39641915
Alignment:
| Q |
122 |
ctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattccta |
200 |
Q |
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|||| |||||||||||| ||||||||||||| |||||| ||||| ||| ||| | ||| ||||||| || |||||||| |
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| T |
39641993 |
ctaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattccta |
39641915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 199
Target Start/End: Complemental strand, 29122350 - 29122273
Alignment:
| Q |
122 |
ctaacccatccttcatactcatcctcaagtgactgtggtagatcccagtggtgcaatgtaacatgtgcttcgattcct |
199 |
Q |
| |
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|||| |||||||||||| ||||||||||||| |||||| ||||| ||| ||| | ||| ||||||| || ||||||| |
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| T |
29122350 |
ctaagccatccttcatattcatcctcaagtgcctgtgggagatcatagttgtgtagtgtgacatgtggttggattcct |
29122273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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