View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17866_low_24 (Length: 237)

Name: NF17866_low_24
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17866_low_24
NF17866_low_24
[»] chr2 (2 HSPs)
chr2 (1-222)||(14242192-14242423)
chr2 (1-222)||(12956067-12956298)


Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14242423 - 14242192
Alignment:
Q  1 cattcacaatgaaagttctcatttttatcttggtttttgtaccatattgtgctcttgcctttgatgtaaaaacagtc----------ctatgttagcgca 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||    
T  14242423 cattcacaatgaaagttctcatttttatcttggtttttgtaccatattgtgctcttgcctttgatgtaaaaacagtcatagactctcctatgttagcgca 14242324  T
Q  91 aaaggtaggaactaatcgcactattaaagttgatattaatggaaatggagattttacatcagtacaagctgccatagattcaattcctgaaggaaattct 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||    
T  14242323 aaaggtaggaactaatcgcactattaaagttgatattaatggaaatggagactttacatcagtacaagctgccatagattcaattcctaaaggaaattct 14242224  T
Q  191 aattgggtcatcgttcatattagaaaaggagt 222  Q
    ||||||||||||||||||||||||||||||||    
T  14242223 aattgggtcatcgttcatattagaaaaggagt 14242192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12956067 - 12956298
Alignment:
Q  1 cattcacaatgaaagttctcatttttatcttggtttttgtaccatattgtgctcttgcctttgatgtaaaaacagtc----------ctatgttagcgca 90  Q
    |||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||          |||||||| | ||    
T  12956067 cattcacaatgaaacttctcatttttattttgttttttgtaccatattgtgctcttgcctttgatgtaaaaacggtcatagactctcctatgttaacaca 12956166  T
Q  91 aaaggtaggaactaatcgcactattaaagttgatattaatggaaatggagattttacatcagtacaagctgccatagattcaattcctgaaggaaattct 190  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  12956167 aaagataggaactaatcgcactattaaagttgatatcaatggaaatggagaatttaaatcagtacaagctgccatagattcaattcctgaaggaaattct 12956266  T
Q  191 aattgggtcatcgttcatattagaaaaggagt 222  Q
    |||||||||||||| |||||||||||||||||    
T  12956267 aattgggtcatcgtccatattagaaaaggagt 12956298  T

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