View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17866_low_4 (Length: 476)

Name: NF17866_low_4
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17866_low_4
NF17866_low_4
[»] chr3 (43 HSPs)
chr3 (1-348)||(13414430-13414777)
chr3 (12-99)||(14027979-14028066)
chr3 (409-461)||(13414838-13414890)
chr3 (12-103)||(35222908-35223001)
chr3 (28-104)||(13845520-13845596)
chr3 (60-104)||(7928470-7928514)
chr3 (60-104)||(40993330-40993374)
chr3 (58-105)||(25093520-25093567)
chr3 (58-104)||(8383275-8383321)
chr3 (58-104)||(8789545-8789591)
chr3 (57-104)||(2941575-2941622)
chr3 (54-100)||(38731232-38731278)
chr3 (58-104)||(49505149-49505195)
chr3 (58-99)||(8039835-8039876)
chr3 (59-104)||(11507470-11507515)
chr3 (87-140)||(21367329-21367382)
chr3 (4-44)||(41961713-41961753)
chr3 (58-105)||(6780413-6780460)
chr3 (13-104)||(10954922-10955016)
chr3 (58-105)||(20691337-20691384)
chr3 (58-104)||(7614410-7614456)
chr3 (4-105)||(11251942-11252041)
chr3 (5-104)||(20503429-20503529)
chr3 (62-104)||(25775531-25775573)
chr3 (58-104)||(45451571-45451617)
chr3 (58-95)||(10690266-10690303)
chr3 (68-105)||(15505784-15505821)
chr3 (60-97)||(17005621-17005658)
chr3 (60-101)||(18426969-18427010)
chr3 (60-105)||(20389636-20389680)
chr3 (60-93)||(29508464-29508497)
chr3 (94-147)||(34185048-34185101)
chr3 (94-143)||(41961579-41961628)
chr3 (58-99)||(48353731-48353772)
chr3 (60-105)||(51206347-51206392)
chr3 (68-104)||(3631712-3631748)
chr3 (12-44)||(10318103-10318135)
chr3 (12-44)||(10335349-10335381)
chr3 (67-131)||(12674468-12674530)
chr3 (12-44)||(24205104-24205136)
chr3 (60-104)||(24633396-24633440)
chr3 (95-143)||(40993275-40993323)
chr3 (60-104)||(55401095-55401139)
[»] chr6 (42 HSPs)
chr6 (58-124)||(21924910-21924976)
chr6 (58-140)||(9025448-9025535)
chr6 (2-143)||(4388049-4388199)
chr6 (58-105)||(7265587-7265634)
chr6 (60-143)||(7938136-7938219)
chr6 (4-104)||(34595090-34595198)
chr6 (21-104)||(5626691-5626776)
chr6 (12-99)||(16488590-16488679)
chr6 (16-104)||(7377953-7378043)
chr6 (58-104)||(19040370-19040416)
chr6 (12-99)||(18367801-18367895)
chr6 (12-104)||(28715267-28715359)
chr6 (60-99)||(7027262-7027301)
chr6 (58-105)||(13360366-13360413)
chr6 (58-104)||(5732505-5732551)
chr6 (58-100)||(9629401-9629443)
chr6 (58-104)||(13364700-13364746)
chr6 (2-99)||(34073347-34073452)
chr6 (58-99)||(7996378-7996419)
chr6 (58-99)||(8022382-8022423)
chr6 (58-99)||(9617452-9617493)
chr6 (58-99)||(26562707-26562748)
chr6 (60-104)||(1700372-1700416)
chr6 (60-104)||(12627572-12627616)
chr6 (60-104)||(28152118-28152162)
chr6 (60-104)||(33001284-33001328)
chr6 (58-97)||(7086813-7086852)
chr6 (58-97)||(9658897-9658936)
chr6 (58-93)||(11591876-11591911)
chr6 (58-104)||(31579222-31579266)
chr6 (58-101)||(32511664-32511707)
chr6 (62-143)||(9027200-9027286)
chr6 (70-104)||(30851630-30851664)
chr6 (59-104)||(7740660-7740705)
chr6 (68-105)||(7977824-7977861)
chr6 (58-99)||(9195754-9195795)
chr6 (94-143)||(17327590-17327639)
chr6 (106-143)||(32839571-32839608)
chr6 (68-104)||(12690444-12690480)
chr6 (68-104)||(16388212-16388248)
chr6 (58-98)||(19044482-19044522)
chr6 (58-94)||(30866149-30866185)
[»] chr2 (40 HSPs)
chr2 (38-105)||(20242721-20242788)
chr2 (35-99)||(34784982-34785046)
chr2 (12-99)||(36096375-36096464)
chr2 (54-111)||(20922916-20922973)
chr2 (60-104)||(34691800-34691844)
chr2 (60-104)||(34714212-34714256)
chr2 (61-104)||(5367213-5367256)
chr2 (58-97)||(39279693-39279732)
chr2 (17-99)||(44860297-44860379)
chr2 (58-141)||(42832234-42832317)
chr2 (2-104)||(24009263-24009359)
chr2 (58-99)||(35056886-35056927)
chr2 (60-104)||(2438714-2438758)
chr2 (58-98)||(18889592-18889632)
chr2 (60-104)||(19536392-19536436)
chr2 (58-98)||(38355888-38355928)
chr2 (58-117)||(8300201-8300260)
chr2 (223-266)||(17277235-17277278)
chr2 (58-101)||(23718044-23718087)
chr2 (58-101)||(24105716-24105759)
chr2 (38-97)||(41843439-41843498)
chr2 (94-145)||(41843516-41843567)
chr2 (58-144)||(25072718-25072803)
chr2 (58-104)||(31018608-31018654)
chr2 (58-104)||(37411239-37411285)
chr2 (58-91)||(21616780-21616813)
chr2 (63-104)||(28596492-28596533)
chr2 (58-95)||(30527599-30527636)
chr2 (60-97)||(31808097-31808134)
chr2 (54-90)||(2665897-2665933)
chr2 (60-104)||(5040754-5040798)
chr2 (60-104)||(5473348-5473392)
chr2 (12-44)||(18054867-18054899)
chr2 (58-98)||(18276539-18276579)
chr2 (68-104)||(21624295-21624331)
chr2 (61-93)||(28524447-28524479)
chr2 (60-100)||(28677929-28677968)
chr2 (60-104)||(30404845-30404889)
chr2 (68-104)||(31855803-31855839)
chr2 (95-143)||(34784911-34784959)
[»] chr7 (46 HSPs)
chr7 (12-85)||(1656648-1656721)
chr7 (49-104)||(39138453-39138508)
chr7 (54-104)||(18213028-18213078)
chr7 (58-105)||(20549809-20549856)
chr7 (58-99)||(5548694-5548735)
chr7 (58-99)||(22602710-22602751)
chr7 (58-102)||(9482952-9482996)
chr7 (12-99)||(9778472-9778559)
chr7 (54-97)||(17851445-17851488)
chr7 (58-104)||(3721111-3721157)
chr7 (53-103)||(5835260-5835310)
chr7 (61-98)||(640134-640171)
chr7 (54-103)||(24146830-24146879)
chr7 (58-143)||(28155588-28155673)
chr7 (58-103)||(32287459-32287504)
chr7 (4-44)||(4017857-4017897)
chr7 (60-104)||(15680829-15680873)
chr7 (60-104)||(26733324-26733368)
chr7 (5-44)||(43249950-43249989)
chr7 (54-96)||(2948697-2948739)
chr7 (58-96)||(3520345-3520383)
chr7 (87-145)||(6490779-6490837)
chr7 (4-38)||(10230134-10230168)
chr7 (58-104)||(12278853-12278898)
chr7 (58-104)||(21880170-21880216)
chr7 (58-92)||(22868060-22868094)
chr7 (94-143)||(598278-598327)
chr7 (58-99)||(7328691-7328732)
chr7 (54-99)||(7758336-7758381)
chr7 (70-99)||(9949071-9949100)
chr7 (60-97)||(15902842-15902879)
chr7 (58-99)||(16341514-16341555)
chr7 (58-99)||(17307911-17307952)
chr7 (106-143)||(18212973-18213010)
chr7 (55-104)||(18226959-18227008)
chr7 (58-99)||(19992019-19992060)
chr7 (54-103)||(22484039-22484088)
chr7 (58-95)||(27732243-27732280)
chr7 (58-99)||(32308138-32308179)
chr7 (4-33)||(38804617-38804646)
chr7 (94-143)||(40131939-40131988)
chr7 (8-44)||(11722161-11722197)
chr7 (12-84)||(13300382-13300454)
chr7 (58-98)||(19206068-19206108)
chr7 (60-104)||(21826293-21826337)
chr7 (60-104)||(25481922-25481966)
[»] chr1 (58 HSPs)
chr1 (13-104)||(30749807-30749904)
chr1 (13-104)||(30771258-30771355)
chr1 (60-104)||(52903269-52903313)
chr1 (61-143)||(13436479-13436562)
chr1 (12-104)||(22881611-22881705)
chr1 (54-105)||(39130761-39130812)
chr1 (54-105)||(39953140-39953191)
chr1 (58-105)||(40181889-40181936)
chr1 (58-104)||(1864875-1864921)
chr1 (21-99)||(25361867-25361945)
chr1 (13-145)||(35702540-35702676)
chr1 (4-45)||(12242517-12242558)
chr1 (58-99)||(34371731-34371772)
chr1 (58-99)||(44482248-44482289)
chr1 (12-104)||(10577730-10577830)
chr1 (58-104)||(9709838-9709884)
chr1 (58-104)||(14332637-14332683)
chr1 (12-95)||(25934592-25934671)
chr1 (58-104)||(36878479-36878525)
chr1 (58-99)||(7918211-7918252)
chr1 (60-97)||(13997903-13997940)
chr1 (60-105)||(18337349-18337394)
chr1 (58-99)||(20157350-20157391)
chr1 (59-104)||(29163376-29163421)
chr1 (60-104)||(5898261-5898305)
chr1 (58-141)||(25452108-25452189)
chr1 (58-98)||(38503338-38503378)
chr1 (60-104)||(51410045-51410089)
chr1 (60-99)||(1486709-1486748)
chr1 (58-105)||(2784574-2784621)
chr1 (60-99)||(5944303-5944342)
chr1 (60-99)||(9828064-9828103)
chr1 (58-97)||(10233271-10233310)
chr1 (59-102)||(17705584-17705626)
chr1 (58-105)||(23636043-23636090)
chr1 (60-99)||(48148037-48148076)
chr1 (54-104)||(1815271-1815321)
chr1 (58-143)||(2288125-2288208)
chr1 (58-124)||(12443436-12443501)
chr1 (15-105)||(18190102-18190192)
chr1 (100-146)||(18556382-18556428)
chr1 (70-104)||(37598861-37598895)
chr1 (61-103)||(38075966-38076008)
chr1 (30-104)||(40258928-40259002)
chr1 (2-44)||(42005026-42005068)
chr1 (58-99)||(6427368-6427409)
chr1 (68-143)||(24334664-24334736)
chr1 (13-99)||(24577186-24577274)
chr1 (58-91)||(25098563-25098596)
chr1 (58-99)||(25272500-25272541)
chr1 (68-104)||(19058851-19058887)
chr1 (58-90)||(19324580-19324612)
chr1 (60-104)||(22515882-22515926)
chr1 (68-104)||(24462671-24462707)
chr1 (60-104)||(38078656-38078700)
chr1 (4-44)||(40917707-40917747)
chr1 (94-142)||(45534131-45534179)
chr1 (60-104)||(46348378-46348422)
[»] chr5 (35 HSPs)
chr5 (36-131)||(32426837-32426932)
chr5 (60-143)||(6247642-6247729)
chr5 (12-99)||(6401462-6401557)
chr5 (12-99)||(21814231-21814320)
chr5 (34-95)||(39758266-39758327)
chr5 (12-99)||(19453066-19453153)
chr5 (58-104)||(26312787-26312833)
chr5 (58-104)||(28588669-28588715)
chr5 (58-104)||(30502383-30502429)
chr5 (58-104)||(30542726-30542772)
chr5 (58-143)||(6326253-6326338)
chr5 (19-101)||(30099036-30099120)
chr5 (55-104)||(42029767-42029816)
chr5 (19-99)||(6471889-6471969)
chr5 (58-104)||(18421836-18421882)
chr5 (58-104)||(34879368-34879414)
chr5 (58-99)||(3966521-3966562)
chr5 (58-103)||(16203791-16203836)
chr5 (60-105)||(21191050-21191095)
chr5 (58-99)||(41091257-41091298)
chr5 (60-104)||(15884008-15884052)
chr5 (4-44)||(21137645-21137685)
chr5 (60-104)||(43564901-43564945)
chr5 (58-104)||(2548405-2548451)
chr5 (58-104)||(17925167-17925213)
chr5 (58-104)||(23012403-23012449)
chr5 (60-105)||(33178045-33178090)
chr5 (58-99)||(36838561-36838602)
chr5 (60-104)||(14422922-14422966)
chr5 (58-98)||(14873535-14873575)
chr5 (88-144)||(19429491-19429547)
chr5 (60-104)||(21576740-21576784)
chr5 (12-44)||(23016054-23016086)
chr5 (58-90)||(24273039-24273071)
chr5 (58-90)||(24389143-24389175)
[»] scaffold0005 (1 HSPs)
scaffold0005 (190-339)||(55682-55831)
[»] chr4 (45 HSPs)
chr4 (190-339)||(14783899-14784048)
chr4 (58-142)||(17425348-17425430)
chr4 (58-141)||(16189727-16189813)
chr4 (58-141)||(22440559-22440641)
chr4 (13-103)||(9996813-9996903)
chr4 (60-104)||(40179631-40179675)
chr4 (28-99)||(46083991-46084063)
chr4 (60-104)||(54580018-54580062)
chr4 (58-104)||(8423713-8423759)
chr4 (58-143)||(10499227-10499311)
chr4 (58-95)||(26504303-26504340)
chr4 (54-99)||(44132644-44132689)
chr4 (12-104)||(4157122-4157213)
chr4 (58-98)||(5775359-5775399)
chr4 (60-104)||(12797333-12797377)
chr4 (58-94)||(40613468-40613504)
chr4 (60-104)||(42640549-42640593)
chr4 (60-104)||(49431046-49431090)
chr4 (15-99)||(5414172-5414264)
chr4 (60-99)||(22234890-22234929)
chr4 (58-104)||(8402737-8402783)
chr4 (70-104)||(20950422-20950456)
chr4 (77-123)||(30094066-30094112)
chr4 (58-99)||(7970537-7970578)
chr4 (58-99)||(13134468-13134509)
chr4 (63-100)||(15029788-15029825)
chr4 (54-99)||(19097894-19097939)
chr4 (100-145)||(28964186-28964231)
chr4 (58-99)||(30982878-30982919)
chr4 (58-91)||(36635342-36635375)
chr4 (70-103)||(42014989-42015022)
chr4 (58-99)||(46160914-46160955)
chr4 (68-104)||(482233-482269)
chr4 (95-143)||(715545-715593)
chr4 (95-143)||(752871-752919)
chr4 (60-104)||(6879460-6879504)
chr4 (60-104)||(12895269-12895313)
chr4 (68-104)||(16073422-16073458)
chr4 (58-98)||(18576038-18576078)
chr4 (3-43)||(21945458-21945498)
chr4 (60-104)||(23292981-23293025)
chr4 (12-44)||(24343471-24343503)
chr4 (60-104)||(28964243-28964287)
chr4 (60-104)||(29205464-29205508)
chr4 (60-104)||(35157980-35158024)
[»] scaffold0279 (1 HSPs)
scaffold0279 (4-104)||(17735-17834)
[»] chr8 (35 HSPs)
chr8 (58-101)||(4786336-4786379)
chr8 (58-105)||(34897103-34897150)
chr8 (58-104)||(13844591-13844637)
chr8 (57-99)||(26902175-26902217)
chr8 (12-104)||(3951531-3951624)
chr8 (71-143)||(11833893-11833969)
chr8 (60-99)||(11927086-11927125)
chr8 (54-97)||(18964191-18964234)
chr8 (58-148)||(27213565-27213649)
chr8 (12-104)||(43737806-43737908)
chr8 (58-104)||(3025569-3025615)
chr8 (61-99)||(8847277-8847315)
chr8 (54-104)||(28747430-28747480)
chr8 (58-104)||(31236572-31236618)
chr8 (58-104)||(33405379-33405425)
chr8 (58-103)||(12606825-12606870)
chr8 (60-104)||(4948672-4948716)
chr8 (58-98)||(14134717-14134757)
chr8 (16-143)||(25566817-25566949)
chr8 (58-97)||(11803277-11803316)
chr8 (60-99)||(11944685-11944724)
chr8 (58-105)||(12985410-12985457)
chr8 (13-104)||(40332170-40332255)
chr8 (13-99)||(16641974-16642060)
chr8 (68-98)||(28384995-28385025)
chr8 (58-104)||(38079017-38079063)
chr8 (69-98)||(8293854-8293883)
chr8 (58-103)||(31109514-31109559)
chr8 (54-99)||(34451037-34451082)
chr8 (12-44)||(926851-926883)
chr8 (58-98)||(20679396-20679436)
chr8 (60-104)||(20873089-20873133)
chr8 (60-104)||(24613540-24613584)
chr8 (58-102)||(31580124-31580168)
chr8 (58-98)||(33382020-33382060)
[»] scaffold0003 (2 HSPs)
scaffold0003 (2-44)||(241548-241590)
scaffold0003 (94-143)||(241675-241724)
[»] scaffold0116 (1 HSPs)
scaffold0116 (12-99)||(9862-9957)
[»] scaffold0623 (1 HSPs)
scaffold0623 (54-99)||(5996-6041)
[»] scaffold0123 (1 HSPs)
scaffold0123 (58-95)||(44529-44566)
[»] scaffold0036 (1 HSPs)
scaffold0036 (58-99)||(9747-9788)
[»] scaffold0020 (1 HSPs)
scaffold0020 (58-99)||(135312-135353)
[»] scaffold0050 (1 HSPs)
scaffold0050 (68-104)||(70306-70342)
[»] scaffold0171 (1 HSPs)
scaffold0171 (60-99)||(23440-23479)
[»] scaffold0022 (2 HSPs)
scaffold0022 (58-105)||(90861-90908)
scaffold0022 (54-99)||(99907-99952)
[»] scaffold0122 (1 HSPs)
scaffold0122 (108-142)||(8761-8795)
[»] scaffold0044 (1 HSPs)
scaffold0044 (58-96)||(53198-53236)
[»] scaffold0236 (1 HSPs)
scaffold0236 (58-99)||(25768-25809)
[»] scaffold0793 (1 HSPs)
scaffold0793 (95-143)||(4821-4869)
[»] scaffold0652 (1 HSPs)
scaffold0652 (60-104)||(457-501)
[»] scaffold0227 (1 HSPs)
scaffold0227 (100-148)||(15047-15095)
[»] scaffold0083 (1 HSPs)
scaffold0083 (68-104)||(45525-45561)
[»] scaffold0053 (1 HSPs)
scaffold0053 (12-44)||(8762-8794)
[»] scaffold0007 (1 HSPs)
scaffold0007 (12-44)||(225331-225363)


Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 13414430 - 13414777
Alignment:
Q  1 tatctatgaagcacggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcgg 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13414430 tatctatgaagcacggacaccagacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcaatgtaattatatgtgtcggtgtcgg 13414529  T
Q  101 acacagggacacgccttatccgagaagtgtctatgcttcatagttgaatattaaagaaccttgcttgtttctaacatcctataaaatgaattattaccat 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13414530 acacagggacacgccttatccgagaagtgtctatacttcatagttgaatattaaagaaccttgcttgtttctaacatcctataaaatgaattattaccat 13414629  T
Q  201 ggtaggtgctggctctagcaagattcttgctcttgttataatgccaaactgtcctaatcctccaagtacactgtaaaagagttcaccattttgctcttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13414630 ggtaggtgctggctctagcaagattcttgctcttgttataatgccaaactgtcctaatcctccaagtacactgtaaaagagttcaccattttgctcttca 13414729  T
Q  301 gaacaatttaccacctctccagttcctgcattcattcatcaacaatcc 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13414730 gaacaatttaccacctctccagttcctgcattcattcatcaacaatcc 13414777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 14027979 - 14028066
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||||||||||||||||||||||||||||||| | || | ||||||||||||| | ||| ||||||||||||||||||||||||||    
T  14027979 cacggacaccggacacgacacggacaccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcg 14028066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 409 - 461
Target Start/End: Original strand, 13414838 - 13414890
Alignment:
Q  409 gccttattattagttggtactttcttatttgactaccaaacataagttgaaaa 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13414838 gccttattattagttggtactttcttatttgactaccaaacataagttgaaaa 13414890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 35222908 - 35223001
Alignment:
Q  12 cacggacaccggacacgacacggacac--cgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    |||||||||| |||||||||| |||||  ||||||||| ||   ||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  35222908 cacggacaccagacacgacacagacacgccgacacaactaacatttttagaaaatcacataattcaatgtaattatatgtgtcggtgtcggaca 35223001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 13845596 - 13845520
Alignment:
Q  28 gacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||||   |||| ||||||||||||| | ||| |||||||||||||||||||||||||||||||    
T  13845596 gacacggacaccgacacagttaaattttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcggacac 13845520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 7928470 - 7928514
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  7928470 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 7928514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 40993374 - 40993330
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  40993374 aaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 40993330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 25093520 - 25093567
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  25093520 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcggacaca 25093567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 8383275 - 8383321
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||    
T  8383275 agaaaatcatataattcagtgtaattataagtgtcggtgtcggacac 8383321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 8789591 - 8789545
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  8789591 agaaaatcacataattccgtgtaattatatgtgtcggtgtcggacac 8789545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 2941575 - 2941622
Alignment:
Q  57 tagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||    
T  2941575 tagaaaatcacaaaatacagtgtaattatatgtgtcggtgtcggacac 2941622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 38731232 - 38731278
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcgg 100  Q
    ||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  38731232 ttttaaaaaatcacataattcagtgtagttatatgtgtcggtgtcgg 38731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 49505195 - 49505149
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||| |||||||||||||||||| |||||||||||    
T  49505195 agaaaatcacataatttagtgtaattatatgtgtcagtgtcggacac 49505149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 8039876 - 8039835
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| | ||||||||||||||||||||||||||||||||    
T  8039876 agaaaattatataattcagtgtaattatatgtgtcggtgtcg 8039835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 11507515 - 11507470
Alignment:
Q  59 gaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||| |||||||||||||||||||||| ||||| ||||||||    
T  11507515 gaaaatcacataattcagtgtaattatatgtttcggtatcggacac 11507470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 21367329 - 21367382
Alignment:
Q  87 tgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttca 140  Q
    ||||||||||||||||||  |||||| ||| ||||||||||||||| |||||||    
T  21367329 tgtgtcggtgtcggacacttggacacacctaatccgagaagtgtctgtgcttca 21367382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 41961753 - 41961713
Alignment:
Q  4 ctatgaagcacggacaccggacacgacacggacaccgacac 44  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  41961753 ctatgaagcacggacaccggacacgacacagacactgacac 41961713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 6780460 - 6780413
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    |||||||||  || |||||||||||||||||||| |||||||||||||    
T  6780460 agaaaatcacgtagttcagtgtaattatatgtgttggtgtcggacaca 6780413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 10954922 - 10955016
Alignment:
Q  13 acggacaccggacacga-cacggacac--cgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||| ||| |||||  ||||||||| ||   ||| | ||||||| ||||||||||||||| | | |||||||||||||||||    
T  10954922 acggacaccggacacgaacactgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaatcacaagtgtcggtgtcggacac 10955016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 20691337 - 20691384
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||| | ||||||||||||||| ||||||||||||||| ||||||    
T  20691337 agaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacaca 20691384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 7614456 - 7614410
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||||||| ||||||||| ||||||||||| ||||    
T  7614456 agaaaatcacataattcagtataattatatatgtcggtgtcgaacac 7614410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 11251942 - 11252041
Alignment:
Q  4 ctatgaagcacggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    |||||||||||||||||  | ||||||| |||||| ||||   | ||   ||| ||||||||| |||||||||||||||  |||||||||||||| ||||    
T  11251942 ctatgaagcacggacactagtcacgacatggacactgacattgctaataatttgagaaaatcacataattcagtgtaat--tatgtgtcggtgtcagaca 11252039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 20503429 - 20503529
Alignment:
Q  5 tatgaagcacggacaccggacacgacacggacac--cgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggac 102  Q
    ||||||||||||| || ||||||||||| |||||  ||||||||| ||   ||| | ||||| | ||||||||||||||||| | |||||||||| ||||    
T  20503429 tatgaagcacggatac-ggacacgacactgacacgccgacacaacaaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgttggac 20503527  T
Q  103 ac 104  Q
    ||    
T  20503528 ac 20503529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 25775531 - 25775573
Alignment:
Q  62 aatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||| ||||||||||||||||| | |||||||||||||||||    
T  25775531 aatcacataattcagtgtaattacaagtgtcggtgtcggacac 25775573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 45451571 - 45451617
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| ||| |||||| |||| |||||||||||||||||||||    
T  45451571 agaaaatcacatacttcagtataataatatgtgtcggtgtcggacac 45451617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 10690303 - 10690266
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggt 95  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  10690303 agaaaatcacataattcagtgtaattatatttgtcggt 10690266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 15505821 - 15505784
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  15505821 ataattcagtgtaattataagtgttggtgtcggacaca 15505784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 17005658 - 17005621
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgt 97  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  17005658 aaaatcatataattcagtgtaattataagtgtcggtgt 17005621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 18426969 - 18427010
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcgga 101  Q
    ||||||| ||||||| |||||||||||| |||||||||||||    
T  18426969 aaaatcacataattcggtgtaattatatatgtcggtgtcgga 18427010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 20389636 - 20389680
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||| |||||||||||||| |||||| ||||||||||||||||    
T  20389636 aaaatcacataattcagtgtaa-tatatgcgtcggtgtcggacaca 20389680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 29508464 - 29508497
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcg 93  Q
    ||||||| ||||||||||||||||||||||||||    
T  29508464 aaaatcatataattcagtgtaattatatgtgtcg 29508497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 34185101 - 34185048
Alignment:
Q  94 gtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatagttga 147  Q
    ||||| ||||| ||||||||||| ||||||| ||||||  ||||||||||||||    
T  34185101 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagttga 34185048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 41961628 - 41961579
Alignment:
Q  94 gtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||| ||||| ||||||||||| ||||||||||||||  ||||||||||    
T  41961628 gtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 48353772 - 48353731
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||||||||||||| | ||||||||||||| |||||||||    
T  48353772 agaaaatcaaataattaattgtaattatatgtatcggtgtcg 48353731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 51206392 - 51206347
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||| |||||||||||||| || | ||||||||||||||||||    
T  51206392 aaaatcacataattcagtgtaaatacaagtgtcggtgtcggacaca 51206347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 3631712 - 3631748
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||||||||| | |||||||||||    
T  3631712 ataattcagtgtaattatatgtgccagtgtcggacac 3631748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 10318135 - 10318103
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacac 44  Q
    ||||||||||||||||||||||||||| |||||    
T  10318135 cacggacaccggacacgacacggacacggacac 10318103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 10335381 - 10335349
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacac 44  Q
    ||||||||||||||||||||||||||| |||||    
T  10335381 cacggacaccggacacgacacggacactgacac 10335349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 12674530 - 12674468
Alignment:
Q  67 aataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtc 131  Q
    |||||||||||||||||  ||||||| |||||||| ||| ||||||||| |||||||| ||||||    
T  12674530 aataattcagtgtaattgcatgtgtc-gtgtcggatacatggacacgcc-tatccgaggagtgtc 12674468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 24205136 - 24205104
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacac 44  Q
    ||||||||||||||||||||||||||| |||||    
T  24205136 cacggacaccggacacgacacggacactgacac 24205104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 24633440 - 24633396
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||  ||||||| ||||||||||||||||||||| ||||||    
T  24633440 aaaatcacgtaattcaatgtaattatatgtgtcggtgttggacac 24633396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 40993323 - 40993275
Alignment:
Q  95 tgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    |||| ||||| ||||||||||| ||||||| |||||| |||||||||||    
T  40993323 tgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 55401095 - 55401139
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||| |||||||||| | |||||||||||||||||    
T  55401095 aaaatcacataatttagtgtaattacaagtgtcggtgtcggacac 55401139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 21924976 - 21924910
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgag 124  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  21924976 agaatatcaaataattcagtgtaattatatgtgtcggtgtcggacaccgggacacgcctaatccgag 21924910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 9025535 - 9025448
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg-----gacacagggacacgccttatccgagaagtgtctatgcttca 140  Q
    ||||||||| ||||||||||||||||||||||||||||||||     ||||| ||||||||||| ||||||||||||||  |||||||    
T  9025535 agaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 4388049 - 4388199
Alignment:
Q  2 atctatgaagcacggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgt---------- 91  Q
    |||||||||||| |||| ||||||| |||||| ||||| |||   |||| | ||||||||||||| ||||| ||| ||||||||||||||              
T  4388049 atctatgaagcatggacgccggacaagacacgaacaccaacag--ccaatttttttagaaaatcacataatccagggtaattatatgtgtcagtgtcgtg 4388146  T
Q  92 -cggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
     ||||||| |||||  |||||||||||||||||||||||||| ||||||||||    
T  4388147 gcggtgtctgacacgaggacacgccttatccgagaagtgtctgtgcttcatag 4388199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 7265634 - 7265587
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7265634 agaaaatcacataattcagtgtaattatatgtgtcggtgtcggacaca 7265587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 7938136 - 7938219
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||||| |||||| |||||||||||| ||||||||||| ||||| | ||||||||| ||||||| ||||||  ||||||||||    
T  7938136 aaaatcatataatttagtgtaattataagtgtcggtgtccgacaccgagacacgcctgatccgaggagtgtccgtgcttcatag 7938219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 34595090 - 34595198
Alignment:
Q  4 ctatgaagcacggacaccggacacgacacggaca--------ccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggt 95  Q
    ||||||||||||||||||||||||||||||||||        |||||||||| ||   ||| | ||||||| ||||||||||||||||| | ||||||||    
T  34595090 ctatgaagcacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggt 34595189  T
Q  96 gtcggacac 104  Q
    |||||||||    
T  34595190 gtcggacac 34595198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 5626776 - 5626691
Alignment:
Q  21 cggacacgacacggacac--cgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||||| |||||  ||||||||| || | |||||||||||||  || |||||||||| ||||||||||||||||||||||    
T  5626776 cggacacgacactgacacgccgacacaactaatttttttagaaaatcacttagttcagtgtaaatatatgtgtcggtgtcggacac 5626691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 16488679 - 16488590
Alignment:
Q  12 cacggacaccggacacgacacggacac--cgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||||||| |||||| ||||||  ||||||| | || | ||||||||||||| | ||| ||||||||||||||||||||||||||    
T  16488679 cacggacaccggaaacgacatggacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcg 16488590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 7377953 - 7378043
Alignment:
Q  16 gacaccggacacgacacggacacc--gacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||||| |||| ||||||  |||||  | |||  ||| ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  7377953 gacaccggacacaacacagacaccccgacaccgctaaaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcggacac 7378043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 19040370 - 19040416
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||    
T  19040370 agaaaatcacataattcagtgtaattatatgtgtctgtgtcggacac 19040416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 18367801 - 18367895
Alignment:
Q  12 cacggacaccggacacgacacggacac-------cgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||||||||||||||||| ||||||       ||||||| | || | ||||||||||||| | ||| ||||||||||||||||||||||||||    
T  18367801 cacggacaccggacacgacatggacacgacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcg 18367895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 28715267 - 28715359
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||||||||||| |||||||| |||||  | ||   ||| | ||||| | ||||||||||||||||| | |||||||||||||||||    
T  28715267 cacggacaccggacacgatacggacactgacacggctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacac 28715359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 7027262 - 7027301
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  7027262 aaaatcacataattcagtgtaattatatgtgtcggtgtcg 7027301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 13360413 - 13360366
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||||| |||||||||||||||||||||| |||||||| ||||||    
T  13360413 agaaaatcacataattcagtgtaattatatgtttcggtgtcagacaca 13360366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 5732551 - 5732505
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| ||| || ||||||||||||||||||||||||||||||    
T  5732551 agaaaatcacatattttagtgtaattatatgtgtcggtgtcggacac 5732505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 9629401 - 9629443
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcgg 100  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  9629401 agaaaatcacataattcaatgtaattatatgtgtcggtgtcgg 9629443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 13364746 - 13364700
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| ||||||||||||||| |||||||||||||| ||||||    
T  13364746 agaaaatcatataattcagtgtaatcatatgtgtcggtgttggacac 13364700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 34073452 - 34073347
Alignment:
Q  2 atctatgaagcacggacaccggacacgacacggacaccgaca---caac----caaat-gttttagaaaatcaaataattcagtgtaattatatgtgtcg 93  Q
    ||||||||||||||||||| ||||||||||||||||| ||||   ||||    | |||  ||| ||||||||  ||||||||||||||||||||| ||||    
T  34073452 atctatgaagcacggacactggacacgacacggacactgacatgccaacatcgctaataatttgagaaaatctcataattcagtgtaattatatgggtcg 34073353  T
Q  94 gtgtcg 99  Q
    ||||||    
T  34073352 gtgtcg 34073347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 7996419 - 7996378
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  7996419 agaaaatcatataattcagtgtaattatatgcgtcggtgtcg 7996378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 8022382 - 8022423
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| ||||||||||||||||||||| ||||||||||    
T  8022382 agaaaatcatataattcagtgtaattatatgcgtcggtgtcg 8022423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 9617452 - 9617493
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  9617452 agaaaatcacataattcaatgtaattatatgtgtcggtgtcg 9617493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 26562707 - 26562748
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  26562707 agaaaatcacataattcagtgtaattatatgtgtcgatgtcg 26562748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 1700372 - 1700416
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||| ||||||||||||||| |||||||||||||||||    
T  1700372 aaaatcacatatttcagtgtaattataagtgtcggtgtcggacac 1700416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 12627616 - 12627572
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||    
T  12627616 aaaatcacataattcagtgtaataatatgtgtcgatgtcggacac 12627572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 28152118 - 28152162
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||    
T  28152118 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacac 28152162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 33001328 - 33001284
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||    
T  33001328 aaaatcacataattaaatgtaattatatgtgtcggtgtcggacac 33001284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 7086813 - 7086852
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgt 97  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  7086813 agaaaatcacataatttagtgtaattatatgtgtcggtgt 7086852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 9658897 - 9658936
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgt 97  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  9658897 agaaaatcacataattcagtgtaattatatttgtcggtgt 9658936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 11591911 - 11591876
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcg 93  Q
    ||||||||| ||||||||||||||||||||||||||    
T  11591911 agaaaatcacataattcagtgtaattatatgtgtcg 11591876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 31579266 - 31579222
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||    
T  31579266 agaaaatcacataattcagtgtaat--tatgtgtcggtgtcggacac 31579222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 32511707 - 32511664
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcgga 101  Q
    ||||||||| ||||||||||||||||||| |||| |||||||||    
T  32511707 agaaaatcacataattcagtgtaattataagtgttggtgtcgga 32511664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 9027200 - 9027286
Alignment:
Q  62 aatcaaataattcagtgtaattatatgtgtcggtgtcg-----gacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||| ||||||| ||||||||||||||||||||||||     ||||| |||||||| || |||| || ||||| | ||||||||||    
T  9027200 aatcacataattccgtgtaattatatgtgtcggtgtcgtgtccgacaccgggacacggctaatccaaggagtgtttgtgcttcatag 9027286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 30851630 - 30851664
Alignment:
Q  70 aattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||| ||||||||||||||||||||||||||||    
T  30851630 aattcaatgtaattatatgtgtcggtgtcggacac 30851664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 7740660 - 7740705
Alignment:
Q  59 gaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||| | |||| |||||||||||||||||| |||||||||||    
T  7740660 gaaaatcacaaaattgagtgtaattatatgtgtcagtgtcggacac 7740705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 7977861 - 7977824
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  7977861 ataattcagtgtaattacaagtgtcggtgtcggacaca 7977824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 9195795 - 9195754
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| | |||||| |||||||||||||||||||||||||    
T  9195795 agaaaatgacataatttagtgtaattatatgtgtcggtgtcg 9195754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 17327639 - 17327590
Alignment:
Q  94 gtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||| ||||||||||||||||| ||||||| ||||||  ||||||||||    
T  17327639 gtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 17327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 32839608 - 32839571
Alignment:
Q  106 gggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  32839608 gggacacgcctaatccgagaagtgtctgtgcttcatag 32839571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 12690444 - 12690480
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  12690444 ataattcaatgtaattatatgtgtcgatgtcggacac 12690480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 16388248 - 16388212
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||| | |||||||||||||||||    
T  16388248 ataattcagtgtaattacaagtgtcggtgtcggacac 16388212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 19044482 - 19044522
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtc 98  Q
    |||| |||| |||||||||||| ||||||||||||||||||    
T  19044482 agaatatcacataattcagtgttattatatgtgtcggtgtc 19044522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 30866185 - 30866149
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcgg 94  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  30866185 agaaaatcacataattcaatgtaattatatgtgtcgg 30866149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 40)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 20242788 - 20242721
Alignment:
Q  38 ccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    |||||||||| || | ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  20242788 ccgacacaactaatttttttagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacaca 20242721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 99
Target Start/End: Complemental strand, 34785046 - 34784982
Alignment:
Q  35 acaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||||||| || | ||||||||||||| |||||| |||||||||||||||||||||||||    
T  34785046 acaccgacacaactaatttttttagaaaatcacataatttagtgtaattatatgtgtcggtgtcg 34784982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 36096464 - 36096375
Alignment:
Q  12 cacggacaccggacacgacacggacac--cgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||||||| | ||||||||||||||  ||||||| | |||| ||||||||||||| | ||| |||||||||||||| |||||||||||    
T  36096464 cacggacaccaggcacgacacggacacgccgacacagctaaattttttagaaaatcacaaaatgcagtgtaattatatttgtcggtgtcg 36096375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 20922973 - 20922916
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggaca 111  Q
    ||||||||||||| |||||| |||||||||||||||||| ||||||||||| ||||||    
T  20922973 ttttagaaaatcacataatttagtgtaattatatgtgtctgtgtcggacacggggaca 20922916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 34691844 - 34691800
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  34691844 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacac 34691800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 34714256 - 34714212
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  34714256 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacac 34714212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 104
Target Start/End: Original strand, 5367213 - 5367256
Alignment:
Q  61 aaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  5367213 aaatcacataattcagtgtaattatatgtgtcggtgtcggacac 5367256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 39279693 - 39279732
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgt 97  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39279693 agaaaatcaaataattcagtgtaattatatgtgtcggtgt 39279732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 44860297 - 44860379
Alignment:
Q  17 acaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||| |||||||||||||||| |||||  | ||   ||| ||||||||  ||||||||||||||||||||||||||||||||    
T  44860297 acaccagacacgacacggacactgacaccgctaataatttgagaaaatcgcataattcagtgtaattatatgtgtcggtgtcg 44860379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 42832317 - 42832234
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcat 141  Q
    ||||||| | ||| ||||||||||||||| ||||||||||| ||| | ||||||||||| |||| || ||||||  ||||||||    
T  42832317 agaaaattacatatttcagtgtaattataagtgtcggtgtccgactccgggacacgcctaatccaaggagtgtccttgcttcat 42832234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 24009263 - 24009359
Alignment:
Q  2 atctatgaagcacggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcgga 101  Q
    |||||||||||||||| || |||||||||||||    ||||||| | || | ||||||||||||| | ||| |||||||| | |||||||||||||||||    
T  24009263 atctatgaagcacggatac-ggacacgacacgg----cgacacagctaatttttttagaaaatcacaaaatgcagtgtaaat-tatgtgtcggtgtcgga 24009356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 35056886 - 35056927
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||| || ||||||||||||||||||||||||||||||||    
T  35056886 agaaaaccatataattcagtgtaattatatgtgtcggtgtcg 35056927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 2438758 - 2438714
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||    
T  2438758 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacac 2438714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 18889632 - 18889592
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtc 98  Q
    ||||||||| ||||||||||||||| |||||||||||||||    
T  18889632 agaaaatcacataattcagtgtaatcatatgtgtcggtgtc 18889592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 19536436 - 19536392
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||    
T  19536436 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacac 19536392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 38355928 - 38355888
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtc 98  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  38355928 agaaaatcacataattcagtgtgattatatgtgtcggtgtc 38355888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Complemental strand, 8300260 - 8300201
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgcctt 117  Q
    ||||||| | |||||| |||||||| ||| |||||||||| |||||| ||||||||||||    
T  8300260 agaaaatgacataatttagtgtaatcataagtgtcggtgttggacaccgggacacgcctt 8300201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 266
Target Start/End: Complemental strand, 17277278 - 17277235
Alignment:
Q  223 attcttgctcttgttataatgccaaactgtcctaatcctccaag 266  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||    
T  17277278 attcttgcccttgttataattccaaattgtcctaatcctccaag 17277235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 23718044 - 23718087
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcgga 101  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||    
T  23718044 agaaagtcacataattcagtgtaattatatgtgtcggtgacgga 23718087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 24105716 - 24105759
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcgga 101  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||    
T  24105716 agaaagtcacataattcagtgtaattatatgtgtcggtgacgga 24105759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 97
Target Start/End: Original strand, 41843439 - 41843498
Alignment:
Q  38 ccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgt 97  Q
    |||||| ||| |||| |||||| |||||| ||||||| || |||||||||||||||||||    
T  41843439 ccgacaaaactaaattttttaggaaatcacataattcggtataattatatgtgtcggtgt 41843498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 41843516 - 41843567
Alignment:
Q  94 gtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatagtt 145  Q
    ||||| ||||| ||||||||| ||||||||| ||||||| ||||||||||||    
T  41843516 gtgtccgacacggggacacgctttatccgaggagtgtctgtgcttcatagtt 41843567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 25072718 - 25072803
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatagt 144  Q
    |||||||||||||||||| | |||| ||| ||||  |||||||| || ||||||| ||| || || ||||||||| |||||||||||    
T  25072718 agaaaatcaaataattcaatctaataataggtgttagtgtcggatac-gggacacacctaatgcgtgaagtgtctgtgcttcatagt 25072803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 31018608 - 31018654
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| || ||| |||||||||||| |||||||||||||||||    
T  31018608 agaaaatcacatgatttagtgtaattataggtgtcggtgtcggacac 31018654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 37411285 - 37411239
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||||||||| ||||||||||||| ||||| ||||    
T  37411285 agaaaatcacataattcagtgtgattatatgtgtcgatgtcgaacac 37411239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 21616780 - 21616813
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgt 91  Q
    ||||||||| ||||||||||||||||||||||||    
T  21616780 agaaaatcacataattcagtgtaattatatgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 28596492 - 28596533
Alignment:
Q  63 atcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||| |||| |||||||||||||| |||||||||||||||||    
T  28596492 atcacataagtcagtgtaattataagtgtcggtgtcggacac 28596533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 30527636 - 30527599
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggt 95  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  30527636 agaaaatcatataatttagtgtaattatatgtgtcggt 30527599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 31808097 - 31808134
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgt 97  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  31808097 aaaatcacataattcagtgtaattatatgtgtcagtgt 31808134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 2665933 - 2665897
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtg 90  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  2665933 ttttagaaaatcacataatttagtgtaattatatgtg 2665897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 5040754 - 5040798
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||||| |||||||| | |||||||||||||||||    
T  5040754 aaaatcacataattcaatgtaattacaagtgtcggtgtcggacac 5040798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 5473348 - 5473392
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||| |||||||  ||||||||||||||||||||    
T  5473348 aaaatcacataattcggtgtaatattatgtgtcggtgtcggacac 5473392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 18054899 - 18054867
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacac 44  Q
    |||||||||||||||||||| ||||||||||||    
T  18054899 cacggacaccggacacgacagggacaccgacac 18054867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 18276539 - 18276579
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtc 98  Q
    |||||||||  ||||||||||||||||| ||||||||||||    
T  18276539 agaaaatcacttaattcagtgtaattatgtgtgtcggtgtc 18276579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 21624295 - 21624331
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||| | |||||||||||||||||    
T  21624295 ataattcagtgtaattacaagtgtcggtgtcggacac 21624331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 28524447 - 28524479
Alignment:
Q  61 aaatcaaataattcagtgtaattatatgtgtcg 93  Q
    |||||| ||||||||||||||||||||||||||    
T  28524447 aaatcacataattcagtgtaattatatgtgtcg 28524479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 28677929 - 28677968
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcgg 100  Q
    ||||||| |||||||||||||||||||||| ||||||||||    
T  28677929 aaaatcacataattcagtgtaattatatgt-tcggtgtcgg 28677968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 30404889 - 30404845
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | ||||||| |||||||||    
T  30404889 aaaatcacataattcagtgtaattacaagtgtcggcgtcggacac 30404845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 31855839 - 31855803
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  31855839 ataattcagtgtaattagatgtgtcggtgtcgaacac 31855803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 34784959 - 34784911
Alignment:
Q  95 tgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    |||| ||||| |||||||||||||| |||| ||||||| ||||||||||    
T  34784959 tgtctgacacggggacacgccttattcgaggagtgtctgtgcttcatag 34784911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 1656648 - 1656721
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattat 85  Q
    |||||| | ||||||||||||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||    
T  1656648 cacggatatcggacacgacacggacaccgacacaactaaattttttaaaaaatcacataattcagtgtaattat 1656721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 39138453 - 39138508
Alignment:
Q  49 aaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  39138453 aaattttttagaaaatcacataattcagtgtaattatatatgtcggtgtcggacac 39138508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 18213078 - 18213028
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  18213078 ttttagaaaatcacataatttagtgtaattatatgtgtcggtgtcggacac 18213028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 20549809 - 20549856
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||    
T  20549809 agaaaatcacgtaattcagtgtaattatatgtgtcggtgtcggacaca 20549856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 5548694 - 5548735
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  5548694 agaaaatcaaataattcagtgtaattatatgtgtcagtgtcg 5548735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 22602751 - 22602710
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  22602751 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 22602710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 9482952 - 9482996
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggac 102  Q
    ||||||||| | |||||||||||||||||||||||||||||||||    
T  9482952 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcggac 9482996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 9778472 - 9778559
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||||||||||||||||||||| |||||| |  |   ||| | ||||||| |||||||||| |||||| | ||||||||||||    
T  9778472 cacggacaccggacacgacacggacactgacacagctgataatttgaaaaaatcacataattcagtataattacaagtgtcggtgtcg 9778559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 17851445 - 17851488
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgt 97  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  17851445 ttttagaaaatcacataattcagtgtaattatatgtgtctgtgt 17851488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 3721111 - 3721157
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||| ||| ||||||||||||||||||||||||||    
T  3721111 agaaaatcacataatttagtataattatatgtgtcggtgtcggacac 3721157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 5835260 - 5835310
Alignment:
Q  53 gttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||| ||||    
T  5835260 gtttgagaaaataacataattcagtgtaattatatgtgtcggtgtcagaca 5835310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 640134 - 640171
Alignment:
Q  61 aaatcaaataattcagtgtaattatatgtgtcggtgtc 98  Q
    |||||| |||||||||||||||||||||||||||||||    
T  640134 aaatcacataattcagtgtaattatatgtgtcggtgtc 640171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 24146830 - 24146879
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    ||||||||||||| |||||||| | |||||||||||||||||||| ||||    
T  24146830 ttttagaaaatcacataattcaatataattatatgtgtcggtgtctgaca 24146879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 28155588 - 28155673
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||||| | ||||||| ||||||||| | |||||||||||||||||  |||||||||| |||| || | ||||  ||||||||||    
T  28155588 agaaaattacataattcggtgtaattacaagtgtcggtgtcggacaccaggacacgcctaatccaaggaatgtccgtgcttcatag 28155673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 32287504 - 32287459
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    ||||||||| ||||||||||| || |||||||||||||||||||||    
T  32287504 agaaaatcacataattcagtgcaagtatatgtgtcggtgtcggaca 32287459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 4017897 - 4017857
Alignment:
Q  4 ctatgaagcacggacaccggacacgacacggacaccgacac 44  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  4017897 ctatgaagcacagacactggacacgacacggacaccgacac 4017857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 15680829 - 15680873
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||| |||||||||||| |||||||||||||||||    
T  15680829 aaaatcacataatttagtgtaattataagtgtcggtgtcggacac 15680873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 26733324 - 26733368
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||||||| |||||| |||||||||||||||||||    
T  26733324 aaaatcacataattcagtctaattaaatgtgtcggtgtcggacac 26733368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 43249950 - 43249989
Alignment:
Q  5 tatgaagcacggacaccggacacgacacggacaccgacac 44  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  43249950 tatgaagcacggacaccggacaagacacggacactgacac 43249989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 2948697 - 2948739
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtg 96  Q
    |||||||||||||  ||||| ||||||||||||||||||||||    
T  2948697 ttttagaaaatcacgtaatttagtgtaattatatgtgtcggtg 2948739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 3520383 - 3520345
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtg 96  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  3520383 agaaaatcatataattcaatgtaattatatgtgtcggtg 3520345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 6490779 - 6490837
Alignment:
Q  87 tgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatagtt 145  Q
    |||||||||||| ||||| ||||||||| | ||||||| ||||||  ||||||||||||    
T  6490779 tgtgtcggtgtccgacaccgggacacgcttaatccgaggagtgtccgtgcttcatagtt 6490837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 38
Target Start/End: Complemental strand, 10230168 - 10230134
Alignment:
Q  4 ctatgaagcacggacaccggacacgacacggacac 38  Q
    ||||||||||||||||||||||| |||||||||||    
T  10230168 ctatgaagcacggacaccggacatgacacggacac 10230134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 12278853 - 12278898
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| | ||||||||||||||||||||||||| |||||||||||    
T  12278853 agaaaatgacataattcagtgtaattatatgtgtc-gtgtcggacac 12278898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 21880170 - 21880216
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| | ||||||||||||||||| | |||||||||||||||||    
T  21880170 agaaaattacataattcagtgtaattacaagtgtcggtgtcggacac 21880216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 22868060 - 22868094
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtc 92  Q
    ||||||||| |||||||||||||||||||||||||    
T  22868060 agaaaatcacataattcagtgtaattatatgtgtc 22868094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 598278 - 598327
Alignment:
Q  94 gtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||| ||||| ||||||||||| ||||||||||||||  ||||||||||    
T  598278 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 7328732 - 7328691
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| | |||||| |||||||||||||||||||||||||    
T  7328732 agaaaataacataatttagtgtaattatatgtgtcggtgtcg 7328691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 7758336 - 7758381
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||||| | |||||||||| ||||||| |||||||||||||    
T  7758336 ttttagaaaattatataattcagtataattatgtgtgtcggtgtcg 7758381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 9949100 - 9949071
Alignment:
Q  70 aattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||||||||||||||||||||||||    
T  9949100 aattcagtgtaattatatgtgtcggtgtcg 9949071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 15902842 - 15902879
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgt 97  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  15902842 aaaatcacataatttagtgtaattatatgtgtcggtgt 15902879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 16341514 - 16341555
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| |||||| |||||||||||||||| ||||||||    
T  16341514 agaaaatcacataattaagtgtaattatatgtgccggtgtcg 16341555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 17307911 - 17307952
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| | |||||||||||||||||||||||| |||||||    
T  17307911 agaaaataacataattcagtgtaattatatgtgttggtgtcg 17307952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 18213010 - 18212973
Alignment:
Q  106 gggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  18213010 gggacacgccttatccgaggagtgtctgtgcttcatag 18212973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 18226959 - 18227008
Alignment:
Q  55 tttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||| ||||||| |||||||||| |||| |||||||||||||||| ||||    
T  18226959 tttataaaatcatataattcagtataatcatatgtgtcggtgtcgaacac 18227008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 19992019 - 19992060
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||    
T  19992019 agaaaatcacatatttcagtgtaattataagtgtcggtgtcg 19992060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 22484039 - 22484088
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    |||||||||||   |||||||||| |||||||||||||||||||| ||||    
T  22484039 ttttagaaaattgcataattcagtataattatatgtgtcggtgtcagaca 22484088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 27732280 - 27732243
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggt 95  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  27732280 agaaaattacataattcagtgtaattatatgtgtcggt 27732243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 32308138 - 32308179
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  32308138 agaaaatcacataattcagtgtaattgtatgtgtcagtgtcg 32308179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 38804646 - 38804617
Alignment:
Q  4 ctatgaagcacggacaccggacacgacacg 33  Q
    ||||||||||||||||||||||||||||||    
T  38804646 ctatgaagcacggacaccggacacgacacg 38804617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 40131988 - 40131939
Alignment:
Q  94 gtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||| |||||||||||||| || ||||||| ||||||| ||||||||||    
T  40131988 gtgtccgacacagggacacgtctaatccgaggagtgtctgtgcttcatag 40131939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 11722197 - 11722161
Alignment:
Q  8 gaagcacggacaccggacacgacacggacaccgacac 44  Q
    |||||||||| |||||||||||||||||||| |||||    
T  11722197 gaagcacggataccggacacgacacggacactgacac 11722161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 13300382 - 13300454
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaatta 84  Q
    ||||||||||| |||||||||||| || |||| ||| ||   ||| | ||||||| |||||||||||||||||    
T  13300382 cacggacaccgaacacgacacggatactgacataactaataatttgaaaaaatcatataattcagtgtaatta 13300454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 19206068 - 19206108
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtc 98  Q
    ||||||||| |||||||| | ||||||||||||||||||||    
T  19206068 agaaaatcacataattcattataattatatgtgtcggtgtc 19206108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 21826293 - 21826337
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||| ||||| |||| |||||||||||||||||||||    
T  21826293 aaaatcacataactcagtctaataatatgtgtcggtgtcggacac 21826337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 25481922 - 25481966
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | |||| ||||||||||||    
T  25481922 aaaatcacataattcagtgtaattacaagtgttggtgtcggacac 25481966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 58)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 30749807 - 30749904
Alignment:
Q  13 acggacaccggacacgacacggacaccg-----acacaaccaaatgtttt-agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||||||||||||||     ||||| | || | |||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  30749807 acggacaccggacacgacacggacaccgcgtcgacacatctaattttttttagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 30749904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 30771258 - 30771355
Alignment:
Q  13 acggacaccggacacgacacggacaccg-----acacaaccaaatgtttt-agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||||||||||||||     ||||| | || | |||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  30771258 acggacaccggacacgacacggacaccgcgtcgacacatctaattttttttagaaaatcacataattcagtgtaattatatgtgtcggtgtcggacac 30771355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 52903269 - 52903313
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  52903269 aaaatcatataattcagtgtaattatatgtgtcggtgtcggacac 52903313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 13436479 - 13436562
Alignment:
Q  61 aaatcaaataattcagtgtaattatatgtgtcggtgtcggacac-agggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    |||||| |||||||||||||||||||||||| ||||||||||||   | ||||| || ||||||||||||||  ||||||||||    
T  13436479 aaatcacataattcagtgtaattatatgtgttggtgtcggacacgtagaacacgactaatccgagaagtgtccgtgcttcatag 13436562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 22881705 - 22881611
Alignment:
Q  12 cacggacaccggacacgacacggacac--cgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||||||| |||||  ||||||||| ||   ||| | ||||||| |||||| |||||||||| | |||||||||||||||||    
T  22881705 cacggacaccggacacgacactgacacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcggacac 22881611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 39130812 - 39130761
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||||||| | |||||| |||||||||||||||||||||||||||||||    
T  39130812 ttttagaaaattatataatttagtgtaattatatgtgtcggtgtcggacaca 39130761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 39953191 - 39953140
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  39953191 ttttagaaaatcacataatttagtgtaattgtatgtgtcggtgtcggacaca 39953140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 40181889 - 40181936
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||    
T  40181889 agaaaatcacataattcagtgtaattatatgtatcggtgtcggacaca 40181936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 1864921 - 1864875
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||||    
T  1864921 agaaaatcacataattcagtgtaattatatgtgtcggtgttggacac 1864875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 25361867 - 25361945
Alignment:
Q  21 cggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||||||||||||| ||||||| ||  |   ||| ||||||||| ||||||||||||||||||||||||| ||||||    
T  25361867 cggacacgacacggacgccgacaccactgataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcg 25361945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 35702676 - 35702540
Alignment:
Q  13 acggacaccggacacgacacggaca--ccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac--aggg 108  Q
    |||||||||||||||||||| ||||  |||||||| | ||   ||| | ||  |||||||||| |||||||||| | ||||| |||||||||||   |||    
T  35702676 acggacaccggacacgacactgacatgccgacacagctaataatttgaaaacttcaaataattaagtgtaattacaagtgtcagtgtcggacacgatggg 35702577  T
Q  109 acacgccttatccgagaagtgtctatgcttcatagtt 145  Q
    |||||||| ||||||| ||||||  ||||||||||||    
T  35702576 acacgcctaatccgaggagtgtccgtgcttcatagtt 35702540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 12242517 - 12242558
Alignment:
Q  4 ctatgaagcacggacaccggacacgacacggacaccgacaca 45  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  12242517 ctatgaagcacggacaccggacacgacacgaacaccgacaca 12242558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 34371731 - 34371772
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  34371731 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 34371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 44482248 - 44482289
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  44482248 agaaaatcacataattcagtgtaattatatgtgtcggtgtcg 44482289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 10577830 - 10577730
Alignment:
Q  12 cacggacaccggacacgacacggacaccg--------acacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    |||||||||||||||||||||||||||||        ||||| | || | ||||||||||||| | ||| ||||||||||||||||||||| | ||||||    
T  10577830 cacggacaccggacacgacacggacaccgacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcgggggcggaca 10577731  T
Q  104 c 104  Q
    |    
T  10577730 c 10577730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 9709838 - 9709884
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||||  ||||||||||||||||||||||||||||    
T  9709838 agaaaatcacataattcgttgtaattatatgtgtcggtgtcggacac 9709884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 14332683 - 14332637
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  14332683 agaaaatcacataatttagtgtaattatatgtctcggtgtcggacac 14332637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 25934592 - 25934671
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggt 95  Q
    ||||||||||||||| ||||||    |||||||| | |||| || |||||||||| | ||| ||||||||||||||||||||||    
T  25934592 cacggacaccggacatgacacg----ccgacacagctaaattttctagaaaatcacaaaatacagtgtaattatatgtgtcggt 25934671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 36878479 - 36878525
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  36878479 agaaaatcacataattcagtgtaattataggtgtcggtgtctgacac 36878525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 7918252 - 7918211
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| ||||||||||||||||||||||||| ||||||    
T  7918252 agaaaatcacataattcagtgtaattatatgtgtcagtgtcg 7918211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 13997903 - 13997940
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgt 97  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  13997903 aaaatcacataattcagtgtaattatatgtgtcggtgt 13997940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 18337349 - 18337394
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||| ||||||||||||||||| | ||||||||||||||||||    
T  18337349 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacaca 18337394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 20157391 - 20157350
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  20157391 agaaaatcacataattcagtgtaatcatatgtgtcggtgtcg 20157350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 29163421 - 29163376
Alignment:
Q  59 gaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||| |||||||| | ||||||||||||||||||||||||||    
T  29163421 gaaaatcacataattcaatttaattatatgtgtcggtgtcggacac 29163376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 5898305 - 5898261
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||||||| ||||||||| |||||    
T  5898305 aaaatcacataattcagtgtaattatatgcgtcggtgtcagacac 5898261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 25452189 - 25452108
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcat 141  Q
    ||||||||  ||||||||||||||||||  ||||||||||| ||||| || |||||||| || |||| ||||||  ||||||||    
T  25452189 agaaaatctcataattcagtgtaattat--gtgtcggtgtcagacaccggaacacgcctaattcgagcagtgtccgtgcttcat 25452108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 38503338 - 38503378
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtc 98  Q
    ||||||||| ||| |||||||||||||||||||||||||||    
T  38503338 agaaaatcatatatttcagtgtaattatatgtgtcggtgtc 38503378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 51410045 - 51410089
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||    
T  51410045 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacac 51410089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 1486748 - 1486709
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  1486748 aaaatcacataattcagtgtaattataagtgtcggtgtcg 1486709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 2784574 - 2784621
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||||| |||||| ||| |||||||||||||||||||| ||||||    
T  2784574 agaaaatcacataattgagtataattatatgtgtcggtgtcagacaca 2784621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 5944303 - 5944342
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  5944303 aaaatcacataattcagtgtaattataagtgtcggtgtcg 5944342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 9828064 - 9828103
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  9828064 aaaatcacataattcagtgtaattttatgtgtcggtgtcg 9828103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 10233271 - 10233310
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgt 97  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  10233271 agaaaatcacataattcagtgtaattatatgtgtctgtgt 10233310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 102
Target Start/End: Complemental strand, 17705626 - 17705584
Alignment:
Q  59 gaaaatcaaataattcagtgtaattatatgtgtcggtgtcggac 102  Q
    |||||||| ||||||||||||||||||||||||| |||||||||    
T  17705626 gaaaatcacataattcagtgtaattatatgtgtc-gtgtcggac 17705584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 23636090 - 23636043
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||| | |||||||||||||||| |||||||||||||| ||||||    
T  23636090 agaaaattacataattcagtgtaattgtatgtgtcggtgtcagacaca 23636043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 48148076 - 48148037
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  48148076 aaaatcatataattcagtgtaattatatatgtcggtgtcg 48148037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 1815271 - 1815321
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||| ||||||| ||||||||||||||||| | ||||||||||| |||||    
T  1815271 ttttaaaaaatcacataattcagtgtaattacaagtgtcggtgtccgacac 1815321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 2288208 - 2288125
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||||||| |||||||| |||||||||  |||||||||||||||||  |  ||||||| ||||||| | ||||  ||||||||||    
T  2288208 agaaaatcacataattcaatgtaattat--gtgtcggtgtcggacacctgagcacgcctaatccgaggaatgtcagtgcttcatag 2288125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 12443501 - 12443436
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgag 124  Q
    ||||||||| |||||||||||||||| |||||| | ||||||||||| | ||||| ||| |||||||    
T  12443501 agaaaatcacataattcagtgtaattgtatgtgac-gtgtcggacaccgagacacacctaatccgag 12443436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 18190192 - 18190102
Alignment:
Q  15 ggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||||||||||||||||| || |||||| | ||   ||| | ||||| | ||||||||||||||||| | |||||| |||| ||||||    
T  18190192 ggacaccggacacgacacggatactgacacacctaataatttgaaaaaattacataattcagtgtaattacaagtgtcgatgtcagacaca 18190102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 146
Target Start/End: Complemental strand, 18556428 - 18556382
Alignment:
Q  100 gacacagggacacgccttatccgagaagtgtctatgcttcatagttg 146  Q
    ||||| ||||||||||| ||||||||||||||  |||||||||||||    
T  18556428 gacactgggacacgcctaatccgagaagtgtccgtgcttcatagttg 18556382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 37598861 - 37598895
Alignment:
Q  70 aattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||| |||||||||||||||||    
T  37598861 aattcagtgtaattataagtgtcggtgtcggacac 37598895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 38076008 - 38075966
Alignment:
Q  61 aaatcaaataattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    |||||| |||| |||||||||| ||||||||||||||||||||    
T  38076008 aaatcacataagtcagtgtaatcatatgtgtcggtgtcggaca 38075966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 40259002 - 40258928
Alignment:
Q  30 cacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||||||||||  ||   ||| | ||||||| ||||||||||||||||| | ||||||||||| |||||    
T  40259002 cacggacaccgacacaattaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcagacac 40258928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 42005068 - 42005026
Alignment:
Q  2 atctatgaagcacggacaccggacacgacacggacaccgacac 44  Q
    ||||||||||||||||||||| ||||||||| ||||| |||||    
T  42005068 atctatgaagcacggacaccgaacacgacacagacacggacac 42005026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 6427368 - 6427409
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| |||||||| ||||||||||||||| |||||||    
T  6427368 agaaaatcacataattcaatgtaattatatgtgttggtgtcg 6427409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 24334736 - 24334664
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||||||||||||||| | |||||||||||||||||   | ||||||| |||| || ||||||  ||||||||||    
T  24334736 ataattcagtgtaattacaagtgtcggtgtcggacac---gtcacgcctaatccaagtagtgtccgtgcttcatag 24334664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 24577274 - 24577186
Alignment:
Q  13 acggacaccggacacgacacggacacc--gacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||||| | |||||||||||||||   |||||||| ||   ||| | ||||||| ||||||||||||||||| | ||||||||||||    
T  24577274 acggacactgaacacgacacggacacgctgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 24577186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 25098596 - 25098563
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgt 91  Q
    ||||||||| ||||||||||||||||||||||||    
T  25098596 agaaaatcacataattcagtgtaattatatgtgt 25098563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 25272500 - 25272541
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| |||||| |||||||||||| ||||||||||||    
T  25272500 agaaaatcacataatttagtgtaattataagtgtcggtgtcg 25272541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 19058887 - 19058851
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||| | |||||||||||||||||    
T  19058887 ataattcagtgtaattacaagtgtcggtgtcggacac 19058851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 19324580 - 19324612
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtg 90  Q
    ||||||||| |||||||||||||||||||||||    
T  19324580 agaaaatcacataattcagtgtaattatatgtg 19324612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 22515926 - 22515882
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||| |||||||||| | |||||||||||||||||    
T  22515926 aaaatcacataatttagtgtaattacaagtgtcggtgtcggacac 22515882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 24462707 - 24462671
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  24462707 ataattcagtgtaattatatctgtcggtgttggacac 24462671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 38078700 - 38078656
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||||| |||||||| | |||||||||||||||||    
T  38078700 aaaatcacataattcaatgtaattacaagtgtcggtgtcggacac 38078656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 40917707 - 40917747
Alignment:
Q  4 ctatgaagcacggacaccggacacgacacggacaccgacac 44  Q
    ||||||| |||||||||||||||||||||||| || |||||    
T  40917707 ctatgaaacacggacaccggacacgacacggatactgacac 40917747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 45534179 - 45534131
Alignment:
Q  94 gtgtcggacacagggacacgccttatccgagaagtgtctatgcttcata 142  Q
    ||||| |||| |||||||||||||||||||| ||||| | |||||||||    
T  45534179 gtgtctgacatagggacacgccttatccgaggagtgtttgtgcttcata 45534131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 46348422 - 46348378
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||| |||||||||| | |||||||||||||||||    
T  46348422 aaaatcatataatttagtgtaattacaagtgtcggtgtcggacac 46348378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 32426932 - 32426837
Alignment:
Q  36 caccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtc 131  Q
    |||||||||  | |||| ||||||||||||| |||||||| ||||||||| ||||||||||||  |||| |||| |||||||||||||| ||||||    
T  32426932 caccgacacggctaaattttttagaaaatcacataattcattgtaattatttgtgtcggtgtctaacacggggatacgccttatccgaggagtgtc 32426837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 6247642 - 6247729
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac----agggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||     ||||||| ||| ||||||||||||||| ||||||||||    
T  6247642 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacacggcacgggacacacctaatccgagaagtgtctgtgcttcatag 6247729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 6401462 - 6401557
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacac--------aaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||||||||||| ||||||||||||||||||        ||| |||| ||||||||||||| | ||| ||||||||||||||||||||||||||    
T  6401462 cacggacaccggacgcgacacggacaccgacacgccgacacaactaaattttttagaaaatcacaaaatacagtgtaattatatgtgtcggtgtcg 6401557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 21814231 - 21814320
Alignment:
Q  12 cacggacaccggacacgacacggacac--cgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||||||| |||||| ||||||  ||||||| | || | ||||||||||||| | ||| ||||||||||||||||||||||||||    
T  21814231 cacggacaccggaaacgacatggacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcg 21814320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 39758266 - 39758327
Alignment:
Q  34 gacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggt 95  Q
    ||||| |||||| | |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  39758266 gacacggacacagctaaattttttagaaaatcacataattcagtgtaattatatgtgtcggt 39758327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 19453153 - 19453066
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||||||||| |||||| |||||||||||   |||| ||||||||||||| | |||  |  ||||||||||||||||||||||    
T  19453153 cacggacaccggacatgacacgaacaccgacacagttaaattttttagaaaatcacaaaatataccgtaattatatgtgtcggtgtcg 19453066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 26312787 - 26312833
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||    
T  26312787 agaaaatcaattaattcagtgtaattatatgtatcggtgtcggacac 26312833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 28588715 - 28588669
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||    
T  28588715 agaaaatcacataattcagtgtaattataggtgtcggtgtcggacac 28588669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 30502429 - 30502383
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||    
T  30502429 agaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacac 30502383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 30542772 - 30542726
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||    
T  30542772 agaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacac 30542726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 6326338 - 6326253
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||||| | ||||||||||||||||| | ||||| | ||||||||| || |||||||| || |||||||||||  ||||||||||    
T  6326338 agaaaattacataattcagtgtaattacaagtgtcagcgtcggacaccggaacacgcctaattcgagaagtgtccgtgcttcatag 6326253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 30099120 - 30099036
Alignment:
Q  19 accggacacgacacggacac--cgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcgga 101  Q
    |||||||||||||  |||||  ||||||||| |||| ||||| | ||||  ||||||| ||||||||||||||||||||||||||    
T  30099120 accggacacgacatagacacgccgacacaactaaattttttaaacaatcgcataattctgtgtaattatatgtgtcggtgtcgga 30099036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 42029767 - 42029816
Alignment:
Q  55 tttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||||||    
T  42029767 tttagaaaatcacataattcaatgtaattatatgtatcggtgtcggacac 42029816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 6471969 - 6471889
Alignment:
Q  19 accggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||||| ||||||||||| |||||  | ||   ||| ||||||||| |||||||||||||||||||||||| |||||||    
T  6471969 accggacatgacacggacactgacacggctaataatttgagaaaatcacataattcagtgtaattatatgtgtgggtgtcg 6471889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 18421882 - 18421836
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| ||||| ||||||||||||||||||||| |||||||||    
T  18421882 agaaaatcacataatccagtgtaattatatgtgtcggcgtcggacac 18421836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 34879368 - 34879414
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| ||||||||||||||| |||||||||| ||||||||||    
T  34879368 agaaaatcatataattcagtgtaataatatgtgtcgatgtcggacac 34879414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 3966521 - 3966562
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  3966521 agaaaatcacacaattcagtgtaattatatgtgtcggtgtcg 3966562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 16203836 - 16203791
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    ||||||||  |||||| |||||||||||||||||||||||||||||    
T  16203836 agaaaatctcataatttagtgtaattatatgtgtcggtgtcggaca 16203791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 21191095 - 21191050
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||| ||||||||||||||||| | ||||||||||||||||||    
T  21191095 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacaca 21191050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 41091298 - 41091257
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  41091298 agaaaatcacataattcagtgtaattatatgtgtcgatgtcg 41091257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 15884008 - 15884052
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||    
T  15884008 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacac 15884052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 21137645 - 21137685
Alignment:
Q  4 ctatgaagcacggacaccggacacgacacggacaccgacac 44  Q
    |||||||||||||||||||||||| |||||||||| |||||    
T  21137645 ctatgaagcacggacaccggacacaacacggacactgacac 21137685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 43564901 - 43564945
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||| |||||||||||| |||||||||||||||||    
T  43564901 aaaatcacataatttagtgtaattataagtgtcggtgtcggacac 43564945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 2548405 - 2548451
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| | ||||||||||||||| ||| |||||||||||||||||    
T  2548405 agaaaattacataattcagtgtaatcataagtgtcggtgtcggacac 2548451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 17925213 - 17925167
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||||| |||||| |||||||||||||||| ||||    
T  17925213 agaaaatcacataattcaatgtaataatatgtgtcggtgtcgaacac 17925167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 23012449 - 23012403
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||| | ||||||||||||||||||||| ||||||    
T  23012449 agaaaatcatataatttaatgtaattatatgtgtcggtgttggacac 23012403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 33178045 - 33178090
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||| |||||| |||||||||| | ||||||||||||||||||    
T  33178045 aaaatcacataatttagtgtaattacaagtgtcggtgtcggacaca 33178090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 36838561 - 36838602
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| | |||||| |||||||||||||||||||||||||    
T  36838561 agaaaattacataatttagtgtaattatatgtgtcggtgtcg 36838602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 14422922 - 14422966
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||||| || ||| ||||||||||    
T  14422922 aaaatcacataattcagtgtaattataagtttcgatgtcggacac 14422966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 14873535 - 14873575
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtc 98  Q
    |||||| || |||||| ||||||||||||||||||||||||    
T  14873535 agaaaagcacataatttagtgtaattatatgtgtcggtgtc 14873575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 144
Target Start/End: Original strand, 19429491 - 19429547
Alignment:
Q  88 gtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatagt 144  Q
    ||||||||||| ||||| ||| |||| || |||| |||||||||| |||||||||||    
T  19429491 gtgtcggtgtctgacaccgggtcacgtctaatccaagaagtgtctgtgcttcatagt 19429547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 21576784 - 21576740
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | |||||| ||||||||||    
T  21576784 aaaatcacataattcagtgtaattacaagtgtcgatgtcggacac 21576740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 23016086 - 23016054
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacac 44  Q
    ||||||| |||||||||||||||||||||||||    
T  23016086 cacggactccggacacgacacggacaccgacac 23016054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 24273071 - 24273039
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtg 90  Q
    ||||||||| |||||||||||||||||||||||    
T  24273071 agaaaatcacataattcagtgtaattatatgtg 24273039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 24389143 - 24389175
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtg 90  Q
    ||||||||| |||||||||||||||||||||||    
T  24389143 agaaaatcacataattcagtgtaattatatgtg 24389175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 339
Target Start/End: Complemental strand, 55831 - 55682
Alignment:
Q  190 attattaccatggtaggtgctggctctagcaagattcttgctcttgttataatgccaaactgtcctaatcctccaagtacactgtaaaagagttcaccat 289  Q
    |||| |||||||| ||||||||| || || |  |||||||| |  ||||||||||||||||| || | ||||||||| ||||| |  ||||| ||  |||    
T  55831 attagtaccatggaaggtgctggttcaagaagaattcttgcacgagttataatgccaaactgaccaagtcctccaagaacactctggaagagctcttcat 55732  T
Q  290 tttgctcttcagaacaatttaccacctctccagttcctgcattcattcat 339  Q
    ||||||  |||||||| ||||| ||||| || ||||||||||||||||||    
T  55731 tttgcttctcagaacagtttacaacctcccctgttcctgcattcattcat 55682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 190 - 339
Target Start/End: Original strand, 14783899 - 14784048
Alignment:
Q  190 attattaccatggtaggtgctggctctagcaagattcttgctcttgttataatgccaaactgtcctaatcctccaagtacactgtaaaagagttcaccat 289  Q
    |||| |||||||| ||||||||| || || |  |||||||| |  ||||||||||||||||| || | ||||||||| ||||| |  ||||| ||  |||    
T  14783899 attagtaccatggaaggtgctggttcaagaagaattcttgcacgagttataatgccaaactgaccaagtcctccaagaacactctggaagagctcttcat 14783998  T
Q  290 tttgctcttcagaacaatttaccacctctccagttcctgcattcattcat 339  Q
    ||||||  |||||||| ||||| ||||| || ||||||||||||||||||    
T  14783999 tttgcttctcagaacagtttacaacctcccctgttcctgcattcattcat 14784048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 142
Target Start/End: Complemental strand, 17425430 - 17425348
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcata 142  Q
    ||||||||  |||||||||||||||  |||||||| ||||| |||||| |||||||||| ||||||| ||||||| |||||||||    
T  17425430 agaaaatcgcataattcagtgtaat--tatgtgtctgtgtcagacacaaggacacgcctaatccgaggagtgtctgtgcttcata 17425348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 16189727 - 16189813
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca---gggacacgccttatccgagaagtgtctatgcttcat 141  Q
    ||||||||| |||||||||||||||||| |||||||||| ||||||||   |||||| | || ||| |||||||||| |||||||||    
T  16189727 agaaaatcacataattcagtgtaattatgtgtgtcggtgacggacacagccgggacatggctaatctgagaagtgtccatgcttcat 16189813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 22440641 - 22440559
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcat 141  Q
    ||||||||| ||||||||||||||||||||||| | ||||| |||||  |||||||||| ||||||| ||||||  ||||||||    
T  22440641 agaaaatcacataattcagtgtaattatatgtgac-gtgtccgacactaggacacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 9996813 - 9996903
Alignment:
Q  13 acggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    |||||||||| ||||||||| |||||||||||   |||   ||| ||||||||| |||||||||| ||||||||||| |||||||| ||||    
T  9996813 acggacaccgaacacgacacagacaccgacactgacaataatttgagaaaatcacataattcagtataattatatgtctcggtgtcagaca 9996903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 40179675 - 40179631
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||    
T  40179675 aaaatcacataattcagtgtaattatatgcgtcggtgtcggacac 40179631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 46084063 - 46083991
Alignment:
Q  28 gacacggacaccg-acacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||||||| ||||| | || |||||||| |||||| |||||  |||||||||||||||||||||||||    
T  46084063 gacacggacaccggacacagctaattgttttagtaaatcacataatctagtgtaattatatgtgtcggtgtcg 46083991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 54580062 - 54580018
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||    
T  54580062 aaaatcacataattcagtgtaattataagtgtcggtgtcggacac 54580018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 8423759 - 8423713
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||||||||||||||||  ||||||||||||||||    
T  8423759 agaaaatcacataattcagtgtaattataaatgtcggtgtcggacac 8423713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 10499311 - 10499227
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||| | |  |||||||| ||||||| | ||||  ||||||||||    
T  10499311 agaaaatcacataatttagtgtaattatatgtgtcagtgtcggac-ccgacacacgcctaatccgaggattgtccgtgcttcatag 10499227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 26504340 - 26504303
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggt 95  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  26504340 agaaaatcaaatagttcagtgtaattatatgtgtcggt 26504303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 44132689 - 44132644
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||||||||||  ||||||||| |||||||||||||||||||||    
T  44132689 ttttagaaaatcacgtaattcagtataattatatgtgtcggtgtcg 44132644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 4157122 - 4157213
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||| |||||||||| ||||| |||||||| ||   ||| | ||||||| |||||| |||| ||||| | |||||||||||||||||    
T  4157122 cacggacaccagacacgacacagacactgacacaactaataatttga-aaaatcacataatttagtgcaattacaagtgtcggtgtcggacac 4157213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 5775399 - 5775359
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtc 98  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  5775399 agaaaatcacataattaagtgtaattatatgtgtcggtgtc 5775359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 12797377 - 12797333
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||    
T  12797377 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacac 12797333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 40613468 - 40613504
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcgg 94  Q
    ||||||||| |||||||||||||||||||||||||||    
T  40613468 agaaaatcacataattcagtgtaattatatgtgtcgg 40613504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 42640549 - 42640593
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||    
T  42640549 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacac 42640593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 49431046 - 49431090
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||    
T  49431046 aaaatcacataattcagtgtaattaaaagtgtcggtgtcggacac 49431090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 5414264 - 5414172
Alignment:
Q  15 ggacaccggacacgacacggacac--------cgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||||||||||||||||||        ||||||| | || | ||||||||||||| | ||| |||||||||||||||| |||||||||    
T  5414264 ggacaccggacacgacacggacacggacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatatgtatcggtgtcg 5414172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 22234929 - 22234890
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| |||||||||||||||| |||||||||||||||    
T  22234929 aaaatcacataattcagtgtaattctatgtgtcggtgtcg 22234890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 8402783 - 8402737
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||||||||||||||||||| || ||||| |||||    
T  8402783 agaaaatcatataattcagtgtaattatatgtctcagtgtcagacac 8402737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 20950456 - 20950422
Alignment:
Q  70 aattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||||||||||||||| |||||    
T  20950456 aattcagtgtaattatatgtgtcggtgtcagacac 20950422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 30094066 - 30094112
Alignment:
Q  77 tgtaattatatgtgtcggtgtcggacacagggacacgccttatccga 123  Q
    |||||||| | ||||||||||||||||| ||||||||||| ||||||    
T  30094066 tgtaattacaagtgtcggtgtcggacaccgggacacgcctaatccga 30094112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 7970537 - 7970578
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| |||||||||||||||||||||| | |||||||    
T  7970537 agaaaatcatataattcagtgtaattatatgttttggtgtcg 7970578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 13134468 - 13134509
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| |||||| ||||||||||||||||||| |||||    
T  13134468 agaaaatcacataatttagtgtaattatatgtgtcgatgtcg 13134509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 15029788 - 15029825
Alignment:
Q  63 atcaaataattcagtgtaattatatgtgtcggtgtcgg 100  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  15029788 atcacataattcagtgtaattatatgtgttggtgtcgg 15029825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 19097939 - 19097894
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||||||||||  ||||||||| ||||||||| |||||||||||    
T  19097939 ttttagaaaatcacgtaattcagtataattatatttgtcggtgtcg 19097894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 28964231 - 28964186
Alignment:
Q  100 gacacagggacacgccttatccgagaagtgtctatgcttcatagtt 145  Q
    ||||| ||||||||||| ||||||| |||||| |||||||||||||    
T  28964231 gacactgggacacgcctaatccgaggagtgtccatgcttcatagtt 28964186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 30982919 - 30982878
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||    
T  30982919 agaaaatcacatatttcagtgtaattataagtgtcggtgtcg 30982878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 91
Target Start/End: Original strand, 36635342 - 36635375
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgt 91  Q
    ||||||||| ||||||||||||||||||||||||    
T  36635342 agaaaatcacataattcagtgtaattatatgtgt 36635375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 42014989 - 42015022
Alignment:
Q  70 aattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    |||||||||||||||||||||| |||||||||||    
T  42014989 aattcagtgtaattatatgtgttggtgtcggaca 42015022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 46160914 - 46160955
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| | |||||||||||| |||||||||||||||||||    
T  46160914 agaaaataacataattcagtgttattatatgtgtcggtgtcg 46160955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 482269 - 482233
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||||||||||||  ||||||||||||||||    
T  482269 ataattcagtgtaattataactgtcggtgtcggacac 482233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 715593 - 715545
Alignment:
Q  95 tgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    |||| ||||||||||||||||| ||||||| ||||||  ||||||||||    
T  715593 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 715545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 752919 - 752871
Alignment:
Q  95 tgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    |||| ||||||||||||||||| ||||||| ||||||  ||||||||||    
T  752919 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 752871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 6879504 - 6879460
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||| |||||||||| | |||||||||||||||||    
T  6879504 aaaatcacataattaagtgtaattacaagtgtcggtgtcggacac 6879460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 12895313 - 12895269
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||  ||||||||||| |||||||||||||||||    
T  12895313 aaaatcacataattttgtgtaattataagtgtcggtgtcggacac 12895269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 16073422 - 16073458
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||| | |||||||||||||||||    
T  16073422 ataattcagtgtaattacaagtgtcggtgtcggacac 16073458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 18576078 - 18576038
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtc 98  Q
    ||||||||| ||||||| |||||||||||||||| ||||||    
T  18576078 agaaaatcacataattcggtgtaattatatgtgttggtgtc 18576038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 21945458 - 21945498
Alignment:
Q  3 tctatgaagcacggacaccggacacgacacggacaccgaca 43  Q
    |||||||||||||||||||||||| ||||| ||||| ||||    
T  21945458 tctatgaagcacggacaccggacatgacacagacactgaca 21945498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 23293025 - 23292981
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||||||| |||||| | |||||||||||||||||    
T  23293025 aaaatcacataattcagtataattacaagtgtcggtgtcggacac 23292981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 24343471 - 24343503
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacac 44  Q
    ||||||||||||||||||||||||| |||||||    
T  24343471 cacggacaccggacacgacacggacgccgacac 24343503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 28964287 - 28964243
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | ||||| |||||||||||    
T  28964287 aaaatcacataattcagtgtaattacaagtgtctgtgtcggacac 28964243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 29205464 - 29205508
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    
T  29205464 aaaatcacataattcagtgtaattacaagtgtcggtgttggacac 29205508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 35158024 - 35157980
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||| |||||||||||| ||||||||||| |||||    
T  35158024 aaaatcacataatttagtgtaattataagtgtcggtgtctgacac 35157980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 17735 - 17834
Alignment:
Q  4 ctatgaagcacggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    ||||||||||| || || |||||||||||||||||||||||||| |  | ||| ||||||||| | || || |||||||| |||||||||||||| ||||    
T  17735 ctatgaagcacagatac-ggacacgacacggacaccgacacaactagttttttaagaaaatcacacaactcggtgtaattgtatgtgtcggtgtcagaca 17833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 4786379 - 4786336
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcgga 101  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  4786379 agaaaatcacataattcagtgtaattatatgtgtcggtgtcgga 4786336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 34897103 - 34897150
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||    
T  34897103 agaaaatcacataattcagtgtaattatatgtgtcgatgtcggacaca 34897150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 13844637 - 13844591
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||    
T  13844637 agaaaatcacataattgagtgtaattatatgtgtcggtgtcggacac 13844591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 99
Target Start/End: Complemental strand, 26902217 - 26902175
Alignment:
Q  57 tagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  26902217 tagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 26902175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 3951624 - 3951531
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacacaaccaaatgttt-tagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||| || |||||||||||||||||||| | |||| |||  | ||||||| | ||| ||||||| ||||||||||||||||| |||||    
T  3951624 cacggacaccagatacgacacggacaccgacacagctaaatttttaaaaaaaatcacaaaatgcagtgtacttatatgtgtcggtgtcagacac 3951531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 11833893 - 11833969
Alignment:
Q  71 attcagtgtaattatatgtgtcggtgtcggacacagg----gacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||||||||||||||||||| ||||||||||||| |     |||||||| ||||||| ||||||| ||||||||||    
T  11833893 attcagtgtaattatatgtgttggtgtcggacacatgtaattacacgcctaatccgaggagtgtctgtgcttcatag 11833969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 11927125 - 11927086
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  11927125 aaaatcacataattcagtgtaattatatgtgtcggtgtcg 11927086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 18964191 - 18964234
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgt 97  Q
    ||||||||||||| |||||||| |||||||||||||||||||||    
T  18964191 ttttagaaaatcacataattcaatgtaattatatgtgtcggtgt 18964234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 27213565 - 27213649
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatagttgaa 148  Q
    ||||||||| |||||||| |||||||||||||||      ||||||| |||||||| || ||||||||||||||  |||||||||| ||||    
T  27213565 agaaaatcacataattcactgtaattatatgtgt------cggacaccgggacacggctaatccgagaagtgtccgtgcttcataggtgaa 27213649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 104
Target Start/End: Complemental strand, 43737908 - 43737806
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacacaacc----------aaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcgga 101  Q
    ||||||||||||||||||||||||||||||||||  |          |||| || | |||||||| | ||| ||||||||||||||||||||||||||||    
T  43737908 cacggacaccggacacgacacggacaccgacacacgccggcacagctaaattttcttgaaaatcacaaaatacagtgtaattatatgtgtcggtgtcgga 43737809  T
Q  102 cac 104  Q
    |||    
T  43737808 cac 43737806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 3025569 - 3025615
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  3025569 agaaaatcacataattcagtgtaattataggtgtcagtgtcggacac 3025615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Original strand, 8847277 - 8847315
Alignment:
Q  61 aaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  8847277 aaatcacataattcagtgtaattatatgtgtcggtgtcg 8847315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 28747480 - 28747430
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||| |||  ||| ||||||||||||||||||||||||||||    
T  28747480 ttttagaaaatcagatagctcaatgtaattatatgtgtcggtgtcggacac 28747430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 31236618 - 31236572
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| |||||||| |||||||||||||||||||| |||||||    
T  31236618 agaaaatcacataattcaatgtaattatatgtgtcggtgacggacac 31236572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 33405425 - 33405379
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||| || |||||| ||||||||||||||||||||||||||||||    
T  33405425 agaaaaacacataatttagtgtaattatatgtgtcggtgtcggacac 33405379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 12606870 - 12606825
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    ||||||||| |||||||| |||||||||||||||||||||| ||||    
T  12606870 agaaaatcatataattcaatgtaattatatgtgtcggtgtcagaca 12606825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 4948672 - 4948716
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||    
T  4948672 aaaatcacataattcagtgtaattacaagtgtcggtgtcggacac 4948716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 14134717 - 14134757
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtc 98  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  14134717 agaaaatcacataattcagtgtaattatatatgtcggtgtc 14134757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 25566817 - 25566949
Alignment:
Q  16 gacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtc-----ggacacagggac 110  Q
    ||||||||||| ||||| ||||| |||||| | ||   ||| | ||||||| ||||||||||||||||| | |||||||||||     ||   | |||||    
T  25566817 gacaccggacatgacacagacactgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgttggtgtccgggac 25566916  T
Q  111 acgccttatccgagaagtgtctatgcttcatag 143  Q
    |||||| ||||||| ||||||| ||||||||||    
T  25566917 acgcctaatccgaggagtgtctgtgcttcatag 25566949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 11803277 - 11803316
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgt 97  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  11803277 agaaaatcacataattcagtgtaattatatgtgttggtgt 11803316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 11944685 - 11944724
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| |||| |||||||||||||||||||||||||||    
T  11944685 aaaatcacataactcagtgtaattatatgtgtcggtgtcg 11944724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 12985410 - 12985457
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||||| |||||||| |||||| |||| |||||||||||||||||    
T  12985410 agaaaatcacataattcaatgtaatcatatatgtcggtgtcggacaca 12985457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 40332170 - 40332255
Alignment:
Q  13 acggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    |||||||||||||||||||||||||| |   |||  ||   ||| ||||||||| ||||||||||||||||| | |||||||||| ||||||    
T  40332170 acggacaccggacacgacacggacactg---caaataa---tttgagaaaatcacataattcagtgtaattacaagtgtcggtgtgggacac 40332255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 16642060 - 16641974
Alignment:
Q  13 acggacaccggacacgacacggacaccgacacaaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||| ||||||||||||| ||||| |||||||| ||   ||| |||||  || |||||| |||||  ||||||||||||||||||    
T  16642060 acggacgccggacacgacacagacactgacacaactaataatttgagaaatacacataatttagtgtcgttatatgtgtcggtgtcg 16641974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 98
Target Start/End: Complemental strand, 28385025 - 28384995
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtc 98  Q
    |||||||||||||||||||||||||||||||    
T  28385025 ataattcagtgtaattatatgtgtcggtgtc 28384995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 38079017 - 38079063
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||| || |||||||||||||||||| |||| ||||||||||    
T  38079017 agaaaatcacatgattcagtgtaattatatgcgtcgatgtcggacac 38079063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 98
Target Start/End: Original strand, 8293854 - 8293883
Alignment:
Q  69 taattcagtgtaattatatgtgtcggtgtc 98  Q
    ||||||||||||||||||||||||||||||    
T  8293854 taattcagtgtaattatatgtgtcggtgtc 8293883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 31109559 - 31109514
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggaca 103  Q
    ||||||||||| |||||||| ||| |||||||||| ||||||||||    
T  31109559 agaaaatcaaacaattcagtctaactatatgtgtcagtgtcggaca 31109514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 34451082 - 34451037
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||| |||||||| | ||| ||||||||||||||||||||||||||    
T  34451082 tttttgaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcg 34451037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 926883 - 926851
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacac 44  Q
    ||||||||||||||||||||||||||| |||||    
T  926883 cacggacaccggacacgacacggacactgacac 926851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 20679436 - 20679396
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtc 98  Q
    ||||||||| ||| ||||||||||||||| |||||||||||    
T  20679436 agaaaatcacatagttcagtgtaattataagtgtcggtgtc 20679396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 20873089 - 20873133
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||| |||||||||| | |||||||||||||||||    
T  20873089 aaaatcacataatttagtgtaattacaagtgtcggtgtcggacac 20873133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 24613540 - 24613584
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| |||||| |||||||||| | |||||||||||||||||    
T  24613540 aaaatcacataattaagtgtaattacaagtgtcggtgtcggacac 24613584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 31580168 - 31580124
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggac 102  Q
    ||||||||| |||||| |||||||||||| |||||| ||||||||    
T  31580168 agaaaatcacataattgagtgtaattataggtgtcgatgtcggac 31580124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 98
Target Start/End: Complemental strand, 33382060 - 33382020
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtc 98  Q
    ||||||| | ||||||||| |||||||||||||||||||||    
T  33382060 agaaaatgacataattcagagtaattatatgtgtcggtgtc 33382020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 241548 - 241590
Alignment:
Q  2 atctatgaagcacggacaccggacacgacacggacaccgacac 44  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  241548 atctatgaagcacggacaccggacacgacacggacactgacac 241590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 241675 - 241724
Alignment:
Q  94 gtgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    ||||| ||||| ||||||||||| ||||||||||||||  ||||||||||    
T  241675 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 9862 - 9957
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacac--------aaccaaatgttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||||||||||||||||| ||||||||||||        | | || | ||||||||||||| | ||| ||||||||||||||||||||||||||    
T  9862 cacggacaccggacacgacatggacaccgacacgccgacacagctaatttttttagaaaatcataaaatgcagtgtaattatatgtgtcggtgtcg 9957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 6041 - 5996
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||||    
T  6041 ttttagaaaatcacaaaatgcagtgtaattatatgtgtcggtgtcg 5996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 95
Target Start/End: Complemental strand, 44566 - 44529
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggt 95  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  44566 agaaaatcacataattcagtgtaattatatgtgtcggt 44529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 9788 - 9747
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    |||||||||  |||||||||||||||||||||||||||||||    
T  9788 agaaaatcacttaattcagtgtaattatatgtgtcggtgtcg 9747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 135353 - 135312
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  135353 agaaaatcacataattctgtgtaattatatgtgtcggtgtcg 135312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 70306 - 70342
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||||| |||||||||||||||||    
T  70306 ataattcagtgtaattataagtgtcggtgtcggacac 70342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 99
Target Start/End: Original strand, 23440 - 23479
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  23440 aaaatcacataattcagtgtaattataagtgtcggtgtcg 23479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 90861 - 90908
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcggacaca 105  Q
    ||||||||| |||||||||||||||||||| ||||| |||| ||||||    
T  90861 agaaaatcatataattcagtgtaattatatatgtcgatgtcagacaca 90908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 99907 - 99952
Alignment:
Q  54 ttttagaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||||| | |||||||| ||||||||||||||| |||||||    
T  99907 ttttagaaaataacataattcaatgtaattatatgtgttggtgtcg 99952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 8761 - 8795
Alignment:
Q  108 gacacgccttatccgagaagtgtctatgcttcata 142  Q
    |||||||||||||||||||||||| ||||||||||    
T  8761 gacacgccttatccgagaagtgtccatgcttcata 8795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 53198 - 53236
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtg 96  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  53198 agaaaatcacataattcagtgtaattataagtgtcggtg 53236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 25809 - 25768
Alignment:
Q  58 agaaaatcaaataattcagtgtaattatatgtgtcggtgtcg 99  Q
    ||||||||| |||||| |||||||||||| ||||||||||||    
T  25809 agaaaatcacataatttagtgtaattataagtgtcggtgtcg 25768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 4869 - 4821
Alignment:
Q  95 tgtcggacacagggacacgccttatccgagaagtgtctatgcttcatag 143  Q
    |||| ||||||||||||||||| ||||||| ||||||  ||||||||||    
T  4869 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 4821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 501 - 457
Alignment:
Q  60 aaaatcaaataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||| | ||||||||||||||| | |||||||||||||||||    
T  501 aaaatcacaaaattcagtgtaattacaagtgtcggtgtcggacac 457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 15047 - 15095
Alignment:
Q  100 gacacagggacacgccttatccgagaagtgtctatgcttcatagttgaa 148  Q
    ||||| ||||||||||||||||||| ||||| | |||||||||| ||||    
T  15047 gacacggggacacgccttatccgaggagtgtttgtgcttcatagatgaa 15095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 104
Target Start/End: Complemental strand, 45561 - 45525
Alignment:
Q  68 ataattcagtgtaattatatgtgtcggtgtcggacac 104  Q
    ||||||||||||||||| | |||||||||||||||||    
T  45561 ataattcagtgtaattacaagtgtcggtgtcggacac 45525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 8762 - 8794
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacac 44  Q
    ||||||||||||||||||||||||||| |||||    
T  8762 cacggacaccggacacgacacggacactgacac 8794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 44
Target Start/End: Complemental strand, 225363 - 225331
Alignment:
Q  12 cacggacaccggacacgacacggacaccgacac 44  Q
    ||||||||||||||||||||||||||| |||||    
T  225363 cacggacaccggacacgacacggacactgacac 225331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University