View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17866_low_7 (Length: 397)
Name: NF17866_low_7
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17866_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 92 - 373
Target Start/End: Original strand, 50526272 - 50526553
Alignment:
| Q |
92 |
aacttcctaatatgtaatttttattttctgaaaattattgaagggcacagtctgattgagcatggcatattctacaacataaactaatatgttaaaatcg |
191 |
Q |
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| T |
50526272 |
aacttcctaacatgtaatttttattttctgaaaattattgaagggcacagtctgattgagcatggcatattctacaacataaactaatatgttaaaatcg |
50526371 |
T |
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| Q |
192 |
aatatgtactagctaaaaactctccccttgtcctgtaaaataaaaaacctctccatacataattacatatgctataccagtataatggtatattcttgtt |
291 |
Q |
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| T |
50526372 |
aatatgtactagctaaaaactctccccttgtcctgtaaaataaaaaacctctccatacataattacatatgctataccagtataatggtatattcttgtt |
50526471 |
T |
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| Q |
292 |
cacatgtatccaccttaattagatatggtacgtcaggaattataattaataaaaaatgttacaaaaaacaacttccacttta |
373 |
Q |
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| T |
50526472 |
cacatgtatccaccttaattagatatggtacgtcaggaattataattaataaaaaatgttgcaaaaaacaacgtccacttta |
50526553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 50525993 - 50526085
Alignment:
| Q |
4 |
ataattctatagataaaatccttcaataggatatcttattcaaataatcgaacattatcatgtctaaaaagtgatcatcacgagcacaaacttc |
97 |
Q |
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| T |
50525993 |
ataattctatagataaaattcttcaataggatatcttgttcaaataatc-aacattatcatgtctaaaaagtgatcatcacgagcacaaacttc |
50526085 |
T |
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