View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17866_low_8 (Length: 395)
Name: NF17866_low_8
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17866_low_8 |
 | |
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| [»] chr4 (2 HSPs) |
| |
|
| [»] chr7 (5 HSPs) |
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|
| [»] scaffold0164 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 51033267 - 51032883
Alignment:
| Q |
9 |
tccaagaatataaactgtttgaggtgaagttggttacgaaaattgaaaataaaaacgtaacatcttctttgataaaaacaaatgtaacttcttctacctc |
108 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51033267 |
tccaaaaatataaactgtttgaagtgaagttggttacgaaaattgaaaataaaaacgtaacatcttctttgataaaaacaaatgtaacttcttctacctc |
51033168 |
T |
|
| Q |
109 |
ttttccattataaccttcggttacaatttcatcttctaccannnnnnncattactaccatttctttccattgatattctcaacatgaaatgaggtgggcc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
51033167 |
ttttccattataaccttcggttacaatttcatcttctaccatttttttcattactaccatttctttccattgatattctcaacatgaaatgaggtggacc |
51033068 |
T |
|
| Q |
209 |
atttaaattaattcattccttaatcctttcttcttataattgtatacaaatatcttaattnnnnnnnnttccattctacgcaaagaaactaatggaaaga |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
51033067 |
atttaaattaattcattccttaatcctttcttcttataattgtatagaaatatcttaatttctcccccttccattctacgcaaagaaactaatggaaaga |
51032968 |
T |
|
| Q |
309 |
ccgnnnnnnnnnnctaaagggaaaggagttgaaaggaaatggcaaattctatggcatgtttcaaatcaaaggttgtgacttacaatc |
395 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51032967 |
ccg--aaaaaaaactaaagggaaaggagttgaaaggaaatggcaaattttatggcatgtttcaaatcaaaggttgtgacttgcaatc |
51032883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 18809203 - 18809260
Alignment:
| Q |
332 |
aggagttgaaaggaaatggcaaattctatggcatgtttcaaatcaaaggttgtgactt |
389 |
Q |
| |
|
||||||||||||||||||| |||||||||| | |||||||||| ||||||| |||||| |
|
|
| T |
18809203 |
aggagttgaaaggaaatggaaaattctatgacgtgtttcaaattaaaggttatgactt |
18809260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 395
Target Start/End: Original strand, 26643124 - 26643508
Alignment:
| Q |
9 |
tccaagaatataaactgtttgaggtgaagttggttacgaaaattgaaaataaaaacgtaacatcttctttgataaaaacaaatgtaacttcttctacctc |
108 |
Q |
| |
|
||||| ||||||||| |||||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26643124 |
tccaaaaatataaaccgtttgaagtgaagttggttacgaaaattcaaaataaaaacctaacttcttctttgataaaaacaaatgtaacttcttctacgtc |
26643223 |
T |
|
| Q |
109 |
ttttccattataaccttcggttacaatttcatcttctaccannnnnnncattactaccatttctttccattgatattctcaacatgaaatgaggtgggcc |
208 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26643224 |
ttttccattacaaccttcggttacaatttcatcttctaccatttttttcattactaccatttctttccatcgatattctcaacatgaaatgaggtgggcc |
26643323 |
T |
|
| Q |
209 |
atttaaattaattcattccttaatcctttcttctt---ataattgtatacaaatatcttaattnnnnnnnnttccattctacgcaaagaaactaatggaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
26643324 |
atttaaattaattcattccttaatcctttcttcttataataattgtatacaaatatcttaatt-tccctccttccattctacgctaagaaactaatggaa |
26643422 |
T |
|
| Q |
306 |
agaccgnnnnnnnnnnctaaagggaaaggagttgaaaggaaatggcaaattctatggcatgtttcaaatcaaaggttgtgacttacaatc |
395 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26643423 |
agacc----aaaaaaactaaagggaaaggagttgaaaggaaatggtaaattccatggcatgtttcaaatcaaaggttgtgacttgcaatc |
26643508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 158 - 265
Target Start/End: Original strand, 45623596 - 45623703
Alignment:
| Q |
158 |
attactaccatttctttccattgatattctcaacatgaaatgaggtgggccatttaaattaattcattccttaatcctttcttcttataattgtatacaa |
257 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45623596 |
attactaccatttctttccattcatattctcaacatgaaatgaggtgggctatttaaattaattcattctttaatcctttcttcttataattgtatacaa |
45623695 |
T |
|
| Q |
258 |
atatctta |
265 |
Q |
| |
|
|||||||| |
|
|
| T |
45623696 |
atatctta |
45623703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 45623416 - 45623547
Alignment:
| Q |
18 |
ataaactgtttgaggtgaagttggttacgaaaattgaaaataaaaacgtaacatcttcttt---gataaaaacaaatgtaacttcttctacctcttttcc |
114 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
45623416 |
ataaactgtttgaagtgaagttggttaccgaaattcaaaataaaaatgtaacttcttcttttttgataaaaacaaatgtaacttcttctgcctcttttcc |
45623515 |
T |
|
| Q |
115 |
attataaccttcggttacaatttcatcttcta |
146 |
Q |
| |
|
|||| ||| |||| ||||||||||| |||||| |
|
|
| T |
45623516 |
attacaactttcgattacaatttcaccttcta |
45623547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 322 - 389
Target Start/End: Original strand, 45631922 - 45631988
Alignment:
| Q |
322 |
ctaaagggaaaggagttgaaaggaaatggcaaattctatggcatgtttcaaatcaaaggttgtgactt |
389 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
45631922 |
ctaaaggggaaggagttgaaatgaaatggtaaattctatggcat-ttttaaatcaaaggttgtgactt |
45631988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 18565806 - 18565863
Alignment:
| Q |
332 |
aggagttgaaaggaaatggcaaattctatggcatgtttcaaatcaaaggttgtgactt |
389 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | |||||||| ||||||| |||||| |
|
|
| T |
18565806 |
aggagttgaaaggaaatggaaaattctatggcgtatttcaaattaaaggttatgactt |
18565863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 7367970 - 7368227
Alignment:
| Q |
18 |
ataaactgtttgaggtgaagttggttacgaaaattgaaaataaaaacgtaacatcttcttt---gataaaaacaaatgtaacttcttctacctcttttcc |
114 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7367970 |
ataaactgtttgaagtgaagttggttaccgaaattcaaaataaaat-gtaacttcttcttttttgataaaaacaaatgtaacttcttctgcctcttttcc |
7368068 |
T |
|
| Q |
115 |
attataaccttcggttacaatttcatcttctaccannnnnnnc--------attactaccatttctttccattgatattctcaacatgaaatgaggtggg |
206 |
Q |
| |
|
|||| || ||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7368069 |
attacaagcttcgattacaatttcaccatctaccttttttattttatttttattactaccatttctttccattgatattctcaacatgaaatgaggtggg |
7368168 |
T |
|
| Q |
207 |
ccatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatctta |
265 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7368169 |
ctatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatctta |
7368227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 7368254 - 7368304
Alignment:
| Q |
322 |
ctaaagggaaaggagttgaaaggaaatggcaaattctatggcatgtttcaa |
372 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7368254 |
ctaaagggagaggagttgaaaggaaatggtaaattgtatggcatgtttcaa |
7368304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 39905076 - 39905329
Alignment:
| Q |
15 |
aatataaactgtttgaggtgaagttggttacgaaaattgaaaataaaaacgtaacatcttc----tttgataa----aaacaaatgtaacttcttctacc |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| |||| ||||| ||||| ||||| |||||||| ||||||||||||||||||||| | |
|
|
| T |
39905076 |
aatataaactgtttgaagtgaagttggttagcaaaattcaaaacaaaaatgtaacttcttctttatttgataaaaacaaacaaatgtaacttcttcta-c |
39905174 |
T |
|
| Q |
107 |
tcttttccattataaccttcggttacaatttcatcttctaccannnnnnncattactaccatttctttccattgatattctcaacatgaaatgaggtggg |
206 |
Q |
| |
|
| |||||| ||| |||||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
39905175 |
ttttttcctttacaaccttcggttacaattttacgttctaccattttttccattactaccattgctttccattgatattctcaacatgaaatgaggtagg |
39905274 |
T |
|
| Q |
207 |
ccatttaaattaattcattccttaatcctttcttcttataattgtatacaaatatctt |
264 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
39905275 |
tcatataaattaattcattccttaatcctttcttctt---attgtatccaaatatctt |
39905329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 389
Target Start/End: Original strand, 39905406 - 39905459
Alignment:
| Q |
336 |
gttgaaaggaaatggcaaattctatggcatgtttcaaatcaaaggttgtgactt |
389 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
39905406 |
gttgaaaggaaatggtaaattctatagcatgtttaaaatcaaaggttgtgactt |
39905459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Complemental strand, 44483444 - 44483387
Alignment:
| Q |
332 |
aggagttgaaaggaaatggcaaattctatggcatgtttcaaatcaaaggttgtgactt |
389 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
44483444 |
aggagttgaaaggaaattgaaaattctatggcgtgtttcaaattaaaggttatgactt |
44483387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 24072097 - 24072151
Alignment:
| Q |
335 |
agttgaaaggaaatggcaaattctatggcatgtttcaaatcaaaggttgtgactt |
389 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
24072097 |
agttgaaaggaaatgaaaaattctatggcgtgtttcaaattaaaggttatgactt |
24072151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 158 - 265
Target Start/End: Complemental strand, 53161438 - 53161331
Alignment:
| Q |
158 |
attactaccatttctttccattgatattctcaacatgaaatgaggtgggccatttaaattaattcattccttaatcctttcttcttataattgtatacaa |
257 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53161438 |
attactatcatttctttccattgatattctcaacatgaaatgaggtgggctatttaaattaattcattccttaatcctttcttcttataattgtatacaa |
53161339 |
T |
|
| Q |
258 |
atatctta |
265 |
Q |
| |
|
|||||||| |
|
|
| T |
53161338 |
atatctta |
53161331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 53161619 - 53161486
Alignment:
| Q |
18 |
ataaactgtttgaggtgaagttggttacgaaaattgaaaataaaaacgtaacatcttcttt---gataaaaacaaatgtaacttcttctacctcttttcc |
114 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||| |||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53161619 |
ataaactgtttgaagtgaagttagttaccgaaattcaaaataaaaatataacttcttcttttttgataaaaacaaatgtaacttcttctgcctcttttcc |
53161520 |
T |
|
| Q |
115 |
attataaccttcggttacaatttcatcttctacc |
148 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||| |
|
|
| T |
53161519 |
attacaaccttcgattacaatttcaccttctacc |
53161486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 53161303 - 53161236
Alignment:
| Q |
322 |
ctaaagggaaaggagttgaaaggaaatggcaaattctatggcatgtttcaaatcaaaggttgtgactt |
389 |
Q |
| |
|
|||||||| |||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53161303 |
ctaaagggggaggagttgaaagtaactggtaaattctatggcatgtttcaaatcaaaggctgtgactt |
53161236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 19833692 - 19833748
Alignment:
| Q |
333 |
ggagttgaaaggaaatggcaaattctatggcatgtttcaaatcaaaggttgtgactt |
389 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
19833692 |
ggagttgaaaggaaatggaaaattctatggcgtgtttcaaattaaaggttatgactt |
19833748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 16554 - 16611
Alignment:
| Q |
332 |
aggagttgaaaggaaatggcaaattctatggcatgtttcaaatcaaaggttgtgactt |
389 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||| ||||||| |||||| |
|
|
| T |
16554 |
aggagttgaaaggaaatgaaaaattctatggcgtgtttcaaattaaaggttatgactt |
16611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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