View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17866_low_9 (Length: 393)
Name: NF17866_low_9
Description: NF17866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17866_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 19 - 177
Target Start/End: Complemental strand, 5142123 - 5141965
Alignment:
| Q |
19 |
aaagtcaacatatagattcttaaagagaagaaatgcagctttaaactcaaaccaatttgtcatcccgcaagcaagtaatgcctggttaaagctttggaag |
118 |
Q |
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| T |
5142123 |
aaagtcaacatatagattcttaaagagaagaaatgcagctttaaactcaaaccaatttgtcatcccgcaagcaagtaatgcctggttaaagctttggaag |
5142024 |
T |
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| Q |
119 |
gtaaaaactattccgagacatgtgcatctgttatggagaaatctgcatagtcatcttcc |
177 |
Q |
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| T |
5142023 |
gtaaaacctattccgagacatgtgcatctgttatggagaaatctgcatagtcatcttcc |
5141965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 176 - 382
Target Start/End: Complemental strand, 5141923 - 5141727
Alignment:
| Q |
176 |
ccttgtgctgtttatgtgaccaacaaaatgaaacaattgatcatctttttagagagtgtgattgggtgaaac-agtgtggtttgcctcaccacactagaa |
274 |
Q |
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| T |
5141923 |
ccttgtgctgtttatgtgaccaacaaaatgaaacaattgatcatctttttagagagtgtgattgggtgaaaatagtgtggtttgcctcaccacactagaa |
5141824 |
T |
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| Q |
275 |
tttgcgaaggatatgttattcttaaatctcacagttgaatctgactcttccaatgtcatagatgctctcaaaaagccttaacatcagagttcctactttg |
374 |
Q |
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| T |
5141823 |
tttgcgaaggatatgttattcttaaatctcacagttgaatctgactcttccaatgtcatag-----------aagccttaacatcagagttcctactttg |
5141735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 269 - 370
Target Start/End: Original strand, 29161012 - 29161113
Alignment:
| Q |
269 |
ctagaatttgcgaaggatatgttattcttaaatctcacagttgaatctgactcttccaatgtcatagatgctctcaaaaagccttaacatcagagttcct |
368 |
Q |
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|||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||| |||||||||| |||| |
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| T |
29161012 |
ctagaatttgcgaaagatatgttattcctaaatctcacatctgaatctgactcttctattgtcatagatgctctaaaaaagcctcaacatcagagatcct |
29161111 |
T |
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| Q |
369 |
ac |
370 |
Q |
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|| |
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| T |
29161112 |
ac |
29161113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 27519784 - 27519889
Alignment:
| Q |
45 |
gaagaaatgcagctttaaactcaaaccaatttgtcatcccgcaagcaagtaatgcctggttaaagctttggaaggtaaaaactattccgagacatgtgca |
144 |
Q |
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||||||||||| ||||||||| |||||||||||||||| |||||| ||||||| ||||||||| ||||| ||| |||||||||||| | ||||||||| |
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| T |
27519784 |
gaagaaatgcatatttaaactccaaccaatttgtcatcctgcaagcgagtaatgtctggttaaaactttgaaagataaaaactattctaaaacatgtgca |
27519883 |
T |
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| Q |
145 |
tctgtt |
150 |
Q |
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|||||| |
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| T |
27519884 |
tctgtt |
27519889 |
T |
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