View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17867_high_8 (Length: 294)
Name: NF17867_high_8
Description: NF17867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17867_high_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 77 - 294
Target Start/End: Complemental strand, 19317211 - 19316976
Alignment:
| Q |
77 |
aaataaataggagagtaaattagtgaaaactctggaaatcttataacaattgcatctgccgtcgtaggaagagcagacacctccacatctgtaacaaaaa |
176 |
Q |
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| T |
19317211 |
aaataaataggagagtaaattagtgaaaactctggaaatcttataacaattgcaactgtcgtcgtaggaagagcagacacctccacatctgtaacaaaaa |
19317112 |
T |
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| Q |
177 |
ccacaaccacacctgcaattcaagaaaacaagttgagttagtaacaaacctttgttgttaattagttgttat------------------aacacacaac |
258 |
Q |
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| T |
19317111 |
ccacaaccacacctgcaattcaagaaaacaagttgagttagtaacaaacctttgttgttaattagttgttattttgttagcggggtgttaaacacacaac |
19317012 |
T |
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| Q |
259 |
ctctttatcactccaaagccaaggtttgcattagaa |
294 |
Q |
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| T |
19317011 |
ctctttatcactccaaagccaaggtttgcattagaa |
19316976 |
T |
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