View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17867_low_1 (Length: 516)
Name: NF17867_low_1
Description: NF17867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17867_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 293 - 498
Target Start/End: Original strand, 32698306 - 32698511
Alignment:
| Q |
293 |
atccttcctttattctactctttataaattgttcttgtcccattgagttgatggttagacttaagcagctgcgccactaggtaattttttgaaactcata |
392 |
Q |
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| T |
32698306 |
atccttcctttattctactctttataaattgttcttgtcccattgagttgagggttagacttaagcagctgcgccactgggtaattttttgaacctcata |
32698405 |
T |
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| Q |
393 |
tttataaattatatatttccttttgtctaaggtaaactttatacattatccttcttcttctttattatggaatatctttttgtttgctgaagaaaataca |
492 |
Q |
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| T |
32698406 |
tttataaattatatacttccttttgtctaaggtaaactttatacattatccttcttcttctttattatggaatatctttttgtttgctgaagaaaataca |
32698505 |
T |
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| Q |
493 |
tagaat |
498 |
Q |
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|||||| |
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| T |
32698506 |
tagaat |
32698511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 32698022 - 32698249
Alignment:
| Q |
13 |
atgaaactgtatacttttctaccacaacaaattcaaatgtctctagaatcaatttcgacctct--ataagtggaatcaaacataaactgtcaatttatta |
110 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32698022 |
atgaaactgtgtatttttctaccacaacaaattcaaatgtctctagaatcaatttcgacctctctataagtggaatcaaacataaactgtcaatttatta |
32698121 |
T |
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| Q |
111 |
gttattttgaaaatttacaaatcttactttaattcaactctcctttcccnnnnnnnnnnnncgttagtttaactctatgtcaaaataaattacaaatctt |
210 |
Q |
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| T |
32698122 |
gttattttgaaaatttacaaatcttactttaattcaactctcatttcccaaaaataaaaaacgttagtttaactctatgtcaaaataaattacaaatctt |
32698221 |
T |
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| Q |
211 |
agtttagtttaactctcctttccgaaag |
238 |
Q |
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| T |
32698222 |
agtttagtttaactctcctttccgaaag |
32698249 |
T |
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