View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17867_low_11 (Length: 240)
Name: NF17867_low_11
Description: NF17867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17867_low_11 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 3 - 240
Target Start/End: Original strand, 17329742 - 17329980
Alignment:
| Q |
3 |
aaaataagcaatgaggaaatgcctccaaaagaaagtcgaggatcaattggttgattccgtgaatacaatgaatacaagacactagtataaagcaacggtt |
102 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17329742 |
aaaaaaagcaatgaggaaatgcctccaaaagaaagtcgaggatcaattggttgattccgtgaatacaatgaatacaagacactagtataaagcaacggtt |
17329841 |
T |
|
| Q |
103 |
gtatcaaatttcattatacaatgaataatcaatatagtatttgatcaatc-aattactctatctcatttacactttcttctccaacatccattatccaaa |
201 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17329842 |
gtatcaaatttcattataaaatgaataatcaatatagtatttgatcaaacaaatgactctatctcatttacactttcttctccaacatccattatccaaa |
17329941 |
T |
|
| Q |
202 |
gcttttagttgaaatcaaaggtaactcatggtgaaattc |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17329942 |
gcttttagttgaaatcaaaggtaactcatggtgaaattc |
17329980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University