View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17867_low_2 (Length: 500)
Name: NF17867_low_2
Description: NF17867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17867_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 48697948 - 48697514
Alignment:
| Q |
19 |
tgaactgtgttgaatttttggcctttaacattgcaaagcttaatgtgtccaactcctccagaactaggac------cggaatccttcatccctccaataa |
112 |
Q |
| |
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||||||||||||||||||||||||| || ||| || ||||||||| ||||| || |||||||| |||| | |||||||||||||||||||||| |
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| T |
48697948 |
tgaactgtgttgaatttttggccttcaatattttgaatcttaatgtgcccaacaccaccagaacttggacttggaccagaatccttcatccctccaataa |
48697849 |
T |
|
| Q |
113 |
tttgaagctttttaagcctgtgtccaattccaggggatggaccagctcctttcaatgtcctgaggactccatttacctctccaattacaccttctttgcc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
48697848 |
tttgaagctttttaagcctgtgtccaattccaggggatggaccagctcctttcaatgtcctgaagactccatttacctctccaattacagcttctttgcc |
48697749 |
T |
|
| Q |
213 |
ttgtaaaggactaagcaatggccttgcttctgatacaagcaaggaaacaagaagaataagagcgatgaatgtgaccgaggaggaattcattcttgtatcc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48697748 |
ttgtaaaggactaagcaatggccttgcttctgatacaagcaaggaaacaagaagaataagagcgatgaatgtgaccg---aggaattcattcttgtatcc |
48697652 |
T |
|
| Q |
313 |
atattttgaatgaaaatcaaggcttagttaattagtgatctctcttagaaacgtatcttggtgtttatttgtatttgtattggaattgataaagtggcat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
48697651 |
atattttgaatgaaaatcaaggcttagttaattagtgatctctcatagaaacgtatcttggtttttatttgtatttgtatttgaattgataaagtggcat |
48697552 |
T |
|
| Q |
413 |
catagaggttctatttataggtaaattctaaagccatg |
450 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
48697551 |
catagaggttctatttataggtaaattctaaagccatg |
48697514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 48693929 - 48693614
Alignment:
| Q |
19 |
tgaactgtgttgaatttttggcctttaacattgcaaagcttaatgtgtccaactcctccagaactaggaccggaatccttcatccctccaataatttgaa |
118 |
Q |
| |
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||||||||||||||||||||||||| || ||| || |||||||| ||||| || |||||||| ||||| ||||||||||||||| ||| | |||||| |
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| T |
48693929 |
tgaactgtgttgaatttttggccttcaatattttgaatcttaatgttcccaacaccaccagaacttggaccagaatccttcatcccttcaagattttgaa |
48693830 |
T |
|
| Q |
119 |
gctttttaagcctgtgtccaattccaggggatggaccagctcctttcaatgtcctgaggactccat---ttacctctccaattacaccttctttgccttg |
215 |
Q |
| |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| | |||||||||||| |||||||||||| ||| |
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| T |
48693829 |
gctttttaagcctgtgtccaatcccaggagatggaccagctcctttcaatgtcctgaaaactccattcatcacctctccaatttcaccttctttgctttg |
48693730 |
T |
|
| Q |
216 |
taaaggactaagcaatggccttgcttctgatacaagcaaggaaacaagaagaataagagcgatgaatgtgaccgaggaggaattcattcttgtatccata |
315 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| || | |||| ||||| | |
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| T |
48693729 |
taatggactaagcaatggccttgcttctgatacaagcaaggaaacaagaagaataagagtgaagaatgtgac---agaggatttgagtcttatatcc--a |
48693635 |
T |
|
| Q |
316 |
ttttgaatgaaaatcaaggct |
336 |
Q |
| |
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||||||||||||||||||||| |
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| T |
48693634 |
ttttgaatgaaaatcaaggct |
48693614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 62 - 286
Target Start/End: Complemental strand, 48701184 - 48700960
Alignment:
| Q |
62 |
tgtgtccaactcctccagaactaggaccggaatccttcatccctccaataatttgaagctttttaagcctgtgtccaattccaggggatggaccagctcc |
161 |
Q |
| |
|
|||| ||||| || ||||| || ||||| |||| |||||||||| ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
48701184 |
tgtggccaacaccaccagagcttggaccagaatgcttcatcccttcaaggttttgaagctttttaaacctgtgtccaactccaggggatggaccagctcc |
48701085 |
T |
|
| Q |
162 |
tttcaatgtcctgaggactccatttacctctccaattacaccttctttgccttgtaaaggactaagcaatggccttgcttctgatacaagcaaggaaaca |
261 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48701084 |
tttcaatgtcctgaagactccatttacctctccaattacgccttctttgccttgtaatggactaagcaatggccttgcttctgatacaagcaaggaaaca |
48700985 |
T |
|
| Q |
262 |
agaagaataagagcgatgaatgtga |
286 |
Q |
| |
|
||||||||||||| || |||||||| |
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| T |
48700984 |
agaagaataagagtgaggaatgtga |
48700960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 94 - 249
Target Start/End: Complemental strand, 48681026 - 48680868
Alignment:
| Q |
94 |
tccttcatccctccaataatttgaagctttttaagcctgtgtccaattccaggggatggaccag---ctcctttcaatgtcctgaggactccatttacct |
190 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||| |||| ||||||||||||||||| || ||||||||||||||| ||||||||||||| |
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| T |
48681026 |
tccttcatcccaccaataatttgaagctttttaagtttgtgcccaactccaggggatggaccagagtcttctttcaatgtcctgaacactccatttacct |
48680927 |
T |
|
| Q |
191 |
ctccaattacaccttctttgccttgtaaaggactaagcaatggccttgcttctgataca |
249 |
Q |
| |
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||||||||||||||||||| |||||||||||| | ||||||| || |||||||||||| |
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| T |
48680926 |
ctccaattacaccttctttcccttgtaaaggattgagcaatgatctagcttctgataca |
48680868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 48687564 - 48687428
Alignment:
| Q |
113 |
tttgaagctttttaagcctgtgtccaattccaggggatggaccagctcctttcaatgtcctgaggactccatttacctctccaattacaccttctttgcc |
212 |
Q |
| |
|
||||||| ||||| ||| ||||||||| ||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
48687564 |
tttgaaggtttttgagcttgtgtccaacaccaggggatggaccagcatcttttaatgtcctgaaaactccatttacctctccaattacaccttctctgcc |
48687465 |
T |
|
| Q |
213 |
ttgtaaaggactaagcaatggccttgcttctgataca |
249 |
Q |
| |
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||||| |||||||| |||||||| |||||||||||| |
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| T |
48687464 |
ttgtagtggactaagaaatggcctagcttctgataca |
48687428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 48687283 - 48687222
Alignment:
| Q |
397 |
attgataaagtggcatcatagaggttctatttataggtaaattctaaagccatgtgacacta |
458 |
Q |
| |
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|||||| ||||||||| ||||| |||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
48687283 |
attgatgaagtggcattatagatgttccatttataggtaaattctaaaaccatgtgacacta |
48687222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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