View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17867_low_3 (Length: 455)
Name: NF17867_low_3
Description: NF17867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17867_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 38867340 - 38867792
Alignment:
| Q |
1 |
ttgagtcactcagttcatatcagtgattattcatgcatcacaatattcaaaattgttggaatatatcaaacaaacaactaataatttctttgatattttg |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38867340 |
ttgagtcactcagttcatatcaatgattattcatgcatcacaatattcaaaattgttggaatatatcaaacaaacaactaataatttctttgatattttg |
38867439 |
T |
|
| Q |
101 |
tcctctaaaaaatgtggaatatatcacatttgttctctaaaaattgaataatcacttagaccttgtttcacccgatgaccaatcaaagtttatcatatcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38867440 |
tcctctaaaaaatgtggaatatatcacatttgttctctaaaaattgaataatcacttagaccttgtttcacccgatgaccaatcaaagtttatcatatcc |
38867539 |
T |
|
| Q |
201 |
ccaaccaccattccaccctttatatcctccccttgtctggttcgaacaaaatcaaggcaatgatatggtgaatgtctgtgtgaactgtgaagggtcta-t |
299 |
Q |
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| T |
38867540 |
ccaaccaccattccaccctttatatcctccccttgtctggttcgaacaaaatcaaggcaatgatatggtgagtgtctgtgtgaactgtgaagggtctatt |
38867639 |
T |
|
| Q |
300 |
tcagaagaatgaaactaaatagtaaatagtagttgaataaaatacatacagtttgagaagttcatgcttcaaaagaatgaaacagc--------nnnnnn |
391 |
Q |
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| T |
38867640 |
tcagaagaatgaaactaaatagtaaatagtagttgaataaaatacatacaatatcagaagttcctgcttcaaaaaaatgaaacagccaaaaaaaaaaaaa |
38867739 |
T |
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| Q |
392 |
nnnncatcaaataacactcattcaacccctttcaatctagaaatatggagtat |
444 |
Q |
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| T |
38867740 |
aaaacatcaaataacactcattcaacccctttcaatctagaaatatggagtat |
38867792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38805708 - 38805639
Alignment:
| Q |
1 |
ttgagtcactcagttcatatcagtgattattcatgcatcacaatattcaaaattgttggaatatatcaaa |
70 |
Q |
| |
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||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38805708 |
ttgagtcactcagttcacatcaaagattattcatgcattacaatattcaaaattgttggaatatatcaaa |
38805639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 447
Target Start/End: Original strand, 38598698 - 38598743
Alignment:
| Q |
402 |
ataacactcattcaacccctttcaatctagaaatatggagtattat |
447 |
Q |
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| T |
38598698 |
ataacactcattcaacccctttcaatctaacaatatggagtattat |
38598743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 39953790 - 39953748
Alignment:
| Q |
405 |
acactcattcaacccctttcaatctagaaatatggagtattat |
447 |
Q |
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| T |
39953790 |
acactcattcaacccctttcaatctagcaatatggagtattat |
39953748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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