View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17867_low_5 (Length: 424)
Name: NF17867_low_5
Description: NF17867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17867_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 17330572 - 17330415
Alignment:
| Q |
55 |
accctttgaatcttaatttttatttggtcttttaaaagattgcattgaagttttaagccaaataggtatctgaatttagcttaaaagtatcaaacttctt |
154 |
Q |
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| T |
17330572 |
accctttgaatcttaatttttatttggtcttttaaaagattgcattgatgttttaagccaaataggtacctgaatttaactaaaaggtatcaaacttctt |
17330473 |
T |
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| Q |
155 |
atggcgtttgatagagttcctttgccacctccgtggatcaaagaagatagagggaatt |
212 |
Q |
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| T |
17330472 |
atggcgtttgatagagttcctttgccacctccgtggatcaaagaagatagagggaatt |
17330415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 290 - 414
Target Start/End: Complemental strand, 17330080 - 17329957
Alignment:
| Q |
290 |
ttcaccacttctggcacatcttgaaaaacaaaaagaacctttatctgcttgacccatcaatcataatttgttccaccttcaagcagtggtaggataccac |
389 |
Q |
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| T |
17330080 |
ttcaccacttctgacacatcttgaaaaacaaaaagaacctttatctgcttgacccatcaatcataatttgttccaccttcaagcagt-gtaggatacctt |
17329982 |
T |
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| Q |
390 |
tgaatttcaccatgagttacctttg |
414 |
Q |
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| T |
17329981 |
tgaatttcaccatgagttacctttg |
17329957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 206
Target Start/End: Original strand, 4434131 - 4434282
Alignment:
| Q |
55 |
accctttgaatcttaatttttatttggtcttttaaaagattgcattgaagttttaagccaaatagg-tatctgaatttagcttaaaagtatcaaacttct |
153 |
Q |
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| T |
4434131 |
accctttgaatctgagttattgtttggtcttttgaaagaccgcattgaagtttttagccaaaagggttatc-gaatctagctgaaaggaatcaaatttct |
4434229 |
T |
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| Q |
154 |
tatggcgtttgatagagttcctttgccacctccgtggatcaaagaagatagag |
206 |
Q |
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| T |
4434230 |
tctgggttttgttggagttcttcttccacctccatggatcaaagaagagagag |
4434282 |
T |
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