View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17867_low_9 (Length: 254)
Name: NF17867_low_9
Description: NF17867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17867_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 56 - 239
Target Start/End: Original strand, 4116797 - 4116978
Alignment:
| Q |
56 |
ataatttccaattcattaactaaaaaacagaatgacctgtaaaatataaaatcgttttaaagnnnnnnnnngcaagagcacaaatgcaaaacaaatatat |
155 |
Q |
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| T |
4116797 |
ataatttccaattcattaactaaaaaacagaatgacctgtaaaatataaaatcgttttaaagaaaaaaa--gcaagagcacaaatgcaaaacaaatatat |
4116894 |
T |
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| Q |
156 |
atgaacagctaaattaatatcaaaatggcacatatagattgaataagaaagatgccacttttagaacaatgttaatggtgatta |
239 |
Q |
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| T |
4116895 |
acgaacagctaaactaatatcaaaatggcacatatagattgaataagaaagatgccacttttagaataatgttaacggtgatta |
4116978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 21155848 - 21155952
Alignment:
| Q |
13 |
aaaataaatagttacccagagataatatactgtacacatgtgaataatttccaattcattaactaaaaaacagaatgacctgtaaaatataaaatcgttt |
112 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21155848 |
aaaataaatagttacccagagataatatattgtacacatgtgaataatttccaattcattaactaaaaaacagaatgacctgtaaaatataaaatcattt |
21155947 |
T |
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| Q |
113 |
taaag |
117 |
Q |
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||||| |
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| T |
21155948 |
taaag |
21155952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 21156172 - 21156266
Alignment:
| Q |
145 |
aacaaatatatatgaacagctaaattaatatcaaaatggcacatatagattgaataagaaagatgccacttttagaacaatgttaatggtgatta |
239 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21156172 |
aacaaatatatatgaacagctaaactaatatcaaagtggcacatatagattgaataagaaagatgccacttttagaacaatgttaatggtgatta |
21156266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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