View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17868_low_3 (Length: 332)
Name: NF17868_low_3
Description: NF17868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17868_low_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 332
Target Start/End: Original strand, 25174554 - 25174869
Alignment:
| Q |
17 |
aagatttggtctctcctcgaaaggctcataaggaatatcataaggactccttggcatgatagaaggagcagaaccaggcatttctaaatcatcaatatca |
116 |
Q |
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| T |
25174554 |
aagatttggtctctcctcgaaaggctcataaggaatatcataaggactccttggcatgatagaaggagcagaaccaggcatttctaaatcatcaatatca |
25174653 |
T |
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| Q |
117 |
gaactatttcttctaatattcaaaggtgacataaaacttggtttcaatgattttttatcaattaaaccattctcaacttgcaacttcaacaattttcttg |
216 |
Q |
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| T |
25174654 |
gaactatttcttctaatattcaaaggtgacataaaacttggtttcaatgattttttatcgattaaaccattctcaacttgcaacttcaacaattttcttg |
25174753 |
T |
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| Q |
217 |
ctctccttctagctataagactctcaagccttctatttctttccatctcagaatttccaagatccatcaaatttttctgatcattttctgtccattcaat |
316 |
Q |
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| T |
25174754 |
ctctccttctagctataagactctcaagccttctatttctttccatctcagaatttccaagatccatcaaatttttctgatcattttctgtccattcaat |
25174853 |
T |
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| Q |
317 |
agcatttttcacatcc |
332 |
Q |
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| T |
25174854 |
agcatttttcacatcc |
25174869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 300
Target Start/End: Original strand, 29591323 - 29591451
Alignment:
| Q |
172 |
tatcaattaaaccattctcaacttgcaacttcaacaattttcttgctctccttctagctataagactctcaagccttctatttctttccatctcagaatt |
271 |
Q |
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| T |
29591323 |
tatcaattaaaccattctcaatctccaacttcaatagttttcttgcccttcttctagctataagactctccaaccttttgttgctttccatctcacaaat |
29591422 |
T |
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| Q |
272 |
tccaagatccatcaaatttttctgatcat |
300 |
Q |
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| T |
29591423 |
cccaagatccattagctttttatgatcat |
29591451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 29591154 - 29591192
Alignment:
| Q |
18 |
agatttggtctctcctcgaaaggctcataaggaatatca |
56 |
Q |
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| T |
29591154 |
agatttggtctctcctcaaaaggttcataaggaatatca |
29591192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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