View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17868_low_4 (Length: 303)
Name: NF17868_low_4
Description: NF17868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17868_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 41420449 - 41420170
Alignment:
| Q |
10 |
agaagaagcatatgaaaaagccacagaagataacatcagaattaaaggtttactcataacaaatccctcaaatccattaggcacagttatggacagaaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41420449 |
agaagaagcatatgaaaaagccacagaagataacatcagaattaaaggtttactcataacaaatccctcaaatccattaggcacagttatggacagaaac |
41420350 |
T |
|
| Q |
110 |
acattaagaaccgttgtaaatttcatcaacgaaaagcgtattcacttaataagcgatgaaatttacgctgcaacggtttttagccacccaagtttcataa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41420349 |
acattaagaaccgttgtaaatttcatcaacgaaaagcgtattcacttaataagcgatgaaatttacgctgcaacggtttttagccacccaagtttcataa |
41420250 |
T |
|
| Q |
210 |
gcatagctgaaatattagaacatgacacagacattgaatgtgaccgtaacctcgttcacatagtttacagtctttcaaaa |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41420249 |
gcatagctgaaatattagaacatgacacagacattgaatgtgaccgtaacctcgttcacatagtttacagtctttcaaaa |
41420170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University