View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17869_high_13 (Length: 306)

Name: NF17869_high_13
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17869_high_13
NF17869_high_13
[»] chr4 (2 HSPs)
chr4 (2-199)||(46890786-46890983)
chr4 (274-306)||(46890679-46890711)
[»] scaffold0055 (8 HSPs)
scaffold0055 (117-154)||(10677-10714)
scaffold0055 (117-154)||(18210-18247)
scaffold0055 (117-154)||(20439-20476)
scaffold0055 (117-154)||(23678-23715)
scaffold0055 (117-154)||(44760-44797)
scaffold0055 (117-154)||(57485-57522)
scaffold0055 (117-154)||(76176-76213)
scaffold0055 (121-154)||(29522-29555)
[»] scaffold0052 (7 HSPs)
scaffold0052 (117-154)||(8667-8704)
scaffold0052 (117-154)||(20682-20719)
scaffold0052 (117-154)||(40109-40146)
scaffold0052 (117-154)||(43079-43116)
scaffold0052 (117-154)||(55089-55126)
scaffold0052 (117-154)||(73821-73858)
scaffold0052 (121-154)||(66510-66543)
[»] scaffold0515 (1 HSPs)
scaffold0515 (119-163)||(10354-10398)
[»] scaffold0152 (3 HSPs)
scaffold0152 (119-163)||(17921-17965)
scaffold0152 (119-163)||(27974-28018)
scaffold0152 (119-163)||(36750-36794)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 46890983 - 46890786
Alignment:
Q  2 gacaacaagtaggaggagcaagtgtatgtcaaaccaaacatgagacatcatgcacaatacaaacaacaaaatgacacacataaaccattaatcaaacact 101  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46890983 gacaacaagtaggaggagcaagtttatgtcaaaccaaacatgaaacatcatgcacaatacaaacaacaaaatgacacacataaaccattaatcaaacact 46890884  T
Q  102 ctaatttgaagccgagttgcgacttccccacaaaaatcaacgcacgttcttccatttgcacattatatcacagaaaatgacattctgaacaacatcta 199  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46890883 ctaatttgaagccgagttgcgacttccccacaaaactcaacgcacgttcttccatttgcacattatatcacagaaaatgacattctgaacaacatcta 46890786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 306
Target Start/End: Complemental strand, 46890711 - 46890679
Alignment:
Q  274 caataagcaaaacgagttattgttaccttcttc 306  Q
    |||||||||||| ||||||||||||||||||||    
T  46890711 caataagcaaaatgagttattgttaccttcttc 46890679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 10714 - 10677
Alignment:
Q  117 gttgcgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||||||| |||||||||||||||||    
T  10714 gttgcgacttccccacaaaactcaacgcacgttcttcc 10677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 18247 - 18210
Alignment:
Q  117 gttgcgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||||||| |||||||||||||||||    
T  18247 gttgcgacttccccacaaaactcaacgcacgttcttcc 18210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 20439 - 20476
Alignment:
Q  117 gttgcgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||||||| |||||||||||||||||    
T  20439 gttgcgacttccccacaaaactcaacgcacgttcttcc 20476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 23678 - 23715
Alignment:
Q  117 gttgcgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||||||| |||||||||||||||||    
T  23678 gttgcgacttccccacaaaactcaacgcacgttcttcc 23715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 44760 - 44797
Alignment:
Q  117 gttgcgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||||||| |||||||||||||||||    
T  44760 gttgcgacttccccacaaaactcaacgcacgttcttcc 44797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 57485 - 57522
Alignment:
Q  117 gttgcgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||||||| |||||||||||||||||    
T  57485 gttgcgacttccccacaaaactcaacgcacgttcttcc 57522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 76176 - 76213
Alignment:
Q  117 gttgcgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||||||| |||||||||||||||||    
T  76176 gttgcgacttccccacaaaactcaacgcacgttcttcc 76213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Complemental strand, 29555 - 29522
Alignment:
Q  121 cgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||| |||||||||||||||||    
T  29555 cgacttccccacaaaactcaacgcacgttcttcc 29522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 8667 - 8704
Alignment:
Q  117 gttgcgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||||||| |||||||||||||||||    
T  8667 gttgcgacttccccacaaaactcaacgcacgttcttcc 8704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 20682 - 20719
Alignment:
Q  117 gttgcgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||||||| |||||||||||||||||    
T  20682 gttgcgacttccccacaaaactcaacgcacgttcttcc 20719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 40146 - 40109
Alignment:
Q  117 gttgcgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||||||| |||||||||||||||||    
T  40146 gttgcgacttccccacaaaactcaacgcacgttcttcc 40109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 43079 - 43116
Alignment:
Q  117 gttgcgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||||||| |||||||||||||||||    
T  43079 gttgcgacttccccacaaaactcaacgcacgttcttcc 43116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 55089 - 55126
Alignment:
Q  117 gttgcgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||||||| |||||||||||||||||    
T  55089 gttgcgacttccccacaaaactcaacgcacgttcttcc 55126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 73821 - 73858
Alignment:
Q  117 gttgcgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||||||| |||||||||||||||||    
T  73821 gttgcgacttccccacaaaactcaacgcacgttcttcc 73858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 154
Target Start/End: Original strand, 66510 - 66543
Alignment:
Q  121 cgacttccccacaaaaatcaacgcacgttcttcc 154  Q
    |||||||||||||||| |||||||||||||||||    
T  66510 cgacttccccacaaaactcaacgcacgttcttcc 66543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 10398 - 10354
Alignment:
Q  119 tgcgacttccccacaaaaatcaacgcacgttcttccatttgcaca 163  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||    
T  10398 tgcgacttccccacaaaactcaacccacgttcttccattttcaca 10354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 17965 - 17921
Alignment:
Q  119 tgcgacttccccacaaaaatcaacgcacgttcttccatttgcaca 163  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||    
T  17965 tgcgacttccccacaaaactcaacccacgttcttccatttccaca 17921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 28018 - 27974
Alignment:
Q  119 tgcgacttccccacaaaaatcaacgcacgttcttccatttgcaca 163  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||    
T  28018 tgcgacttccccacaaaactcaacccacgttcttccattttcaca 27974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 36794 - 36750
Alignment:
Q  119 tgcgacttccccacaaaaatcaacgcacgttcttccatttgcaca 163  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||    
T  36794 tgcgacttccccacaaaactcaacccacgttcttccattttcaca 36750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University