View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17869_high_14 (Length: 300)
Name: NF17869_high_14
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17869_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 128 - 281
Target Start/End: Complemental strand, 16074635 - 16074483
Alignment:
| Q |
128 |
ttagtctcatacacttttgtacctttcgcttcaatatacgcttgacatgatcaaccctcaatatcatctatactatcatgttatgcgaatattttaatat |
227 |
Q |
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| T |
16074635 |
ttagtctcatacactttcgtcccttt-gcttcaatatacgcttgacattgtcgaccctcaatatcatctatactatcatgttctgcgaatattttaatat |
16074537 |
T |
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| Q |
228 |
ccattttaattaaacgacttgttattgttccattcatgaaattgatattaaaat |
281 |
Q |
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| T |
16074536 |
ccattttaatgaaacgacttgttattgttccattcatgaaattgatattaaaat |
16074483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 150 - 281
Target Start/End: Complemental strand, 16063859 - 16063728
Alignment:
| Q |
150 |
ctttcgcttcaatatacgcttgacatgatcaaccctcaatatcatctatactatcatgttatgcgaatattttaatatccattttaattaaacgacttgt |
249 |
Q |
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| T |
16063859 |
ctttcgcttcaatatacgcttgacgttgtcgaccctcaaaatcatctatactatcatgttctgcgaatattttaatatccattttaatgaaacgacttgt |
16063760 |
T |
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| Q |
250 |
tattgttccattcatgaaattgatattaaaat |
281 |
Q |
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| T |
16063759 |
tattgttccattcatgaaattgatattaaaat |
16063728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 16062646 - 16062547
Alignment:
| Q |
33 |
atgaacaagagctcaaattaaaatttcatacattcaataggaaagctgaagaaaattgcagtggttcgaagagccaattttgcaatgattaggtattagt |
132 |
Q |
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| T |
16062646 |
atgaacaagagttcaaattaaaatttcatacattcaataggaaagctgaagaaaattgcaatggttcgaagagccaaatttgcaatgattaggtattagt |
16062547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 128 - 281
Target Start/End: Complemental strand, 16074879 - 16074725
Alignment:
| Q |
128 |
ttagtctcatacacttttgtacctttcgcttcaatatacgcttgacatgatcaaccctcaatatcatctatactatcatgttatgcgaatattttaatat |
227 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| |||| |||||||||||| |
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| T |
16074879 |
ttagtctcatacacttttgtctctttcgcttcaatatacgcttgacattgtcgaccctgaatatcatctatactatcatgttctgcggatattttaatat |
16074780 |
T |
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| Q |
228 |
ccattttaattaaacgacttgtta-----ttgttccattcatgaaattgatattaaaat |
281 |
Q |
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| T |
16074779 |
c----ttaatgaaacgacttgttattaatttgttccattcatgaaattgatattaaaat |
16074725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 16074041 - 16073942
Alignment:
| Q |
33 |
atgaacaagagctcaaattaaaatttcatacattcaataggaaagctgaagaaaattgcagtggttcgaagagccaattttgcaatgattaggtattagt |
132 |
Q |
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| T |
16074041 |
atgaacaagagctcaaattaaaatttcatacattcaataggaaagctgaagaaaattacaatggttcgaagagccaaatttgtaatgattaggtattagt |
16073942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 132
Target Start/End: Complemental strand, 16068856 - 16068758
Alignment:
| Q |
33 |
atgaacaagagctcaaattaaaatttcatacattcaataggaaagctgaagaaaattgcagtggttcgaagagccaattttgcaatgattaggtattagt |
132 |
Q |
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| T |
16068856 |
atgaacaatagctcaaattaaaaattcgtacattcaatacaaaagctgaggaaagttgcagtggttcg-agaggcaaatttgcaatgattaggtattagt |
16068758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 16095506 - 16095443
Alignment:
| Q |
218 |
attttaatatccattttaattaaacgacttgttattgttccattcatgaaattgatattaaaat |
281 |
Q |
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| T |
16095506 |
attttaatatcaatttgaatgaaaggacttgttattgaacctttcatgaaatggatattaaaat |
16095443 |
T |
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