View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17869_high_3 (Length: 478)
Name: NF17869_high_3
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17869_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 51 - 466
Target Start/End: Original strand, 1686393 - 1686808
Alignment:
| Q |
51 |
atgcgtgagaattttgtctaattagtttggggatacttgataatgaacttaagacttatatcattggtatacggaacaatattgaatttgcatctttgaa |
150 |
Q |
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| T |
1686393 |
atgcgtgagaattttgtctaattagtttggggatacttgataatgaacttaagacttatatcattggtatacggaacaatattgaatttgcatctttgaa |
1686492 |
T |
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| Q |
151 |
aggaattgacgatcttctaaaaaagttggttgaaactgaaacacaagttgtttatcagcttctgaagttagtaataattctcccttggccatatcaatcg |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1686493 |
aggaattgacgatcttctaaaaaagttggttgaaactgaaacacaagttgtttatcagcttctgaagttagtaataattctcccttggccatatcaatcg |
1686592 |
T |
|
| Q |
251 |
tcgaatgatctttttatgctataaaaattatgaaaactatataacataattgaatgggaacattgtatgaatgattatttggtgacttatgttgaaacta |
350 |
Q |
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| T |
1686593 |
tcgaatgatctttttatgctataaaaattatgaaaactatataacataattgaatgggaacattgtatgaatgattatttggtgacttatattgaaacta |
1686692 |
T |
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| Q |
351 |
atgtgttggatagtaatgatgagtcggttaatcaacgattttagatcatgaaattctttcaaggacaatcatatatcatttatataactatttttggtac |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1686693 |
atgtgttggatagtaatgatgagtcggttaatcaacgatttcagatcatgaaattctttcaaggacaatcatatatcatttatataactatttttggtac |
1686792 |
T |
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| Q |
451 |
attagaaattgagtat |
466 |
Q |
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| T |
1686793 |
attagaaattgagtat |
1686808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 188
Target Start/End: Original strand, 27927696 - 27927798
Alignment:
| Q |
86 |
cttgataatgaacttaagacttatatcattggtatacggaacaatattgaatttgcatctttgaaaggaattgacgatcttctaaaaaagttggttgaaa |
185 |
Q |
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||||||||| ||||| ||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||| |
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| T |
27927696 |
cttgataatcaacttgagacttatatcattgatatgcacaacaatattaaatttgcatctttgaaaggaattagtgatctttcaaaaaagttggttgaaa |
27927795 |
T |
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| Q |
186 |
ctg |
188 |
Q |
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||| |
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| T |
27927796 |
ctg |
27927798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 10069017 - 10069118
Alignment:
| Q |
86 |
cttgataatgaacttaagacttatatcattggtatacggaacaatattgaatttgcatctttgaaaggaattgacgatcttctaaaaaagttggttgaaa |
185 |
Q |
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||||||||| ||||| ||||||||||||||| ||| | | ||||||| ||||||||||||||||||||||| |||||| ||||||||| |||||| |
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| T |
10069017 |
cttgataatcaacttgagacttatatcattgatatgctcagcaatattaaatttgcatctttgaaaggaattagtgatctttcgaaaaagttgtttgaaa |
10069116 |
T |
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| Q |
186 |
ct |
187 |
Q |
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|| |
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|
| T |
10069117 |
ct |
10069118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 23086527 - 23086571
Alignment:
| Q |
143 |
tctttgaaaggaattgacgatcttctaaaaaagttggttgaaact |
187 |
Q |
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| T |
23086527 |
tctttgaaaggaattgacgatctttcagaaaagttggttgaaact |
23086571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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