View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17869_high_4 (Length: 452)
Name: NF17869_high_4
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17869_high_4 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 12 - 452
Target Start/End: Complemental strand, 10612517 - 10612077
Alignment:
| Q |
12 |
tgagatgaaggctccaatgctgccgtaaacaccaccgcagccatcactaaccacaaattaataagtgaaataaggaattaaaataaaacacaataagcat |
111 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10612517 |
tgagttgaaggctccaatgctaccgtaaacaccaccgcagccatcactaaccacaaattaataagtgaaataaggaattaaaataaaacacaataagcat |
10612418 |
T |
|
| Q |
112 |
aaaatcaaatagtattgatgccaataatgaataaatatttcaacaactgcatcaatggagaaaacggctgcataatttaaatttcttaatttatccagtg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10612417 |
aaaatcaaatagtattgatgccaataatgaataaatatttcaacaactgcatcgatggagaaaacggctgcataattaaaatttcttaatttatccagtg |
10612318 |
T |
|
| Q |
212 |
attgtttcatttcagcatgaaagtaaatnnnnnnncaatcacatggttgataaaataatgatgctgattccaacatttgaacagaagtatataaaataat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10612317 |
attgtttcatttcagcatgaaagtaaataaaaaaacaatcacatggttgataaaataatgatgccgattccaacatttgaacagaagtatataaaataat |
10612218 |
T |
|
| Q |
312 |
aagttgataggattaagaatataaaatcaacaaccacattaatataaagtattcaaattttaactagagttgaaattggctggccgtgtgaaactgatga |
411 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
10612217 |
gagttggtaggattaagaatataaaatcaacaaccacattaatataaagtattcaaattttaacaagagttgaaattggctggccatgtgacactgatga |
10612118 |
T |
|
| Q |
412 |
gattatattatatcgaaaaacaggatgtcccacaaagtatg |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10612117 |
gattatattatatcgaaaaacaggatgtcccacaaagtatg |
10612077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 424
Target Start/End: Complemental strand, 10604104 - 10603995
Alignment:
| Q |
319 |
taggattaagaa--tataaaatcaacaaccacattaatataaag--tattcaaattttaactagagttgaaattggctggccgtgtgaaactgatgagat |
414 |
Q |
| |
|
|||||||||||| |||||| ||||||| |||||||||||||| || ||||| ||||| |||||||||| ||||| || ||||| ||| |||||| |
|
|
| T |
10604104 |
taggattaagaacatataaagtcaacaatcacattaatataaaaattaaacaaatgttaacaagagttgaaactggctagcaatgtgatactattgagat |
10604005 |
T |
|
| Q |
415 |
tatattatat |
424 |
Q |
| |
|
|||||||||| |
|
|
| T |
10604004 |
tatattatat |
10603995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 41240712 - 41240654
Alignment:
| Q |
67 |
aattaataagtgaaataaggaattaaaataaaacacaataagcataaaatcaaatagta |
125 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
41240712 |
aattaagaagtgatttaaggaattaaaataaaatacaataaacataaaatcaaatagta |
41240654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 30984715 - 30984643
Alignment:
| Q |
83 |
aaggaattaaaataaaacacaataagcataaaatcaaatagtattgatgccaataatgaataaatatttcaaca |
156 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||| |||||| || || |||||||| |||||||||||||| |
|
|
| T |
30984715 |
aaggaattaaaataaaacatgataaacataaaatcaagtagtatcga-gctaataatgattaaatatttcaaca |
30984643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University