View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17869_high_6 (Length: 428)
Name: NF17869_high_6
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17869_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 22 - 413
Target Start/End: Original strand, 10744168 - 10744562
Alignment:
| Q |
22 |
acgccaaacctatgtagaccaactgatggggcaacttatctccaatccggctaagcttgtgggatgcgttgagttgagagcaatatgtttttctttacat |
121 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
10744168 |
acgccgaacctatgtagaccaactgatggggcaacttatctccaatccggctaagcttgtgggatgcgttgagttgagaccaatatgtttttctttacat |
10744267 |
T |
|
| Q |
122 |
gtgttaacaagatattttctgcgtacaatccaaagactaattctttgaactagataggatcgtaatcggtggcaaaactttctcacaatagattttgcaa |
221 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10744268 |
gtgttaacaagatattttctgcgtacaacccaaagactaattcttagaactagataggatcgtaatcggtggcaaaactttctcacaatagattttgcaa |
10744367 |
T |
|
| Q |
222 |
tttataacttttgaaaggactcgtgtagctgctattttgagaagtgaataatttacnnnnnnnnnnntataaatttattcaaatgtttagattaaaccaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
10744368 |
tttataacttttgaaaggactcgtgtagctgctattttgagaagtgaataatttac-aacaaaaaaatataaatttattcaaatgtttagattaaaccaa |
10744466 |
T |
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| Q |
322 |
tcattttctttcaaaagtctctccattactcaacttgctgaagaaga----aaataaataagaatatgaaatatctcatttcgtgtgccgttatat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10744467 |
tcattttctttcaaaagtctctccattactcaacttgctgaagaagaaaataaataaataagaatatgaaatatctcatttcgtgtgccgttatat |
10744562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 28096481 - 28096417
Alignment:
| Q |
293 |
aatttattcaaatgtttagattaaaccaatcattttctttcaaaagtctctccattactcaactt |
357 |
Q |
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| T |
28096481 |
aatttatccacatgtttagagtaaaccaaccattttctttcaaaagtctctcaataactcaactt |
28096417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 21925051 - 21924993
Alignment:
| Q |
304 |
atgtttagattaaaccaatcattttctttcaaaagtctctccattactcaacttgctgaa |
363 |
Q |
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||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| ||||| |
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| T |
21925051 |
atgtttagagtaaaccaaccattttctttc-aaagtctccccattactcaactttctgaa |
21924993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 357
Target Start/End: Complemental strand, 26260668 - 26260615
Alignment:
| Q |
304 |
atgtttagattaaaccaatcattttctttcaaaagtctctccattactcaactt |
357 |
Q |
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||||||||| |||| ||| |||||||||| | |||||||||||||| ||||||| |
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| T |
26260668 |
atgtttagagtaaatcaaccattttctttaataagtctctccattattcaactt |
26260615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 30600101 - 30600150
Alignment:
| Q |
314 |
taaaccaatcattttctttcaaaagtctctccattactcaacttgctgaa |
363 |
Q |
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|||||||| |||||||||||||||| |||| |||||||||||| ||||| |
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| T |
30600101 |
taaaccaacaattttctttcaaaagtatctcaattactcaactttctgaa |
30600150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 5956003 - 5955959
Alignment:
| Q |
319 |
caatcattttctttcaaaagtctctccattactcaacttgctgaa |
363 |
Q |
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|||| ||||||||||||||||||||| ||||||||| || ||||| |
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| T |
5956003 |
caattattttctttcaaaagtctctcaattactcaattttctgaa |
5955959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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