View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17869_low_10 (Length: 361)
Name: NF17869_low_10
Description: NF17869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17869_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 163 - 346
Target Start/End: Original strand, 3122918 - 3123101
Alignment:
| Q |
163 |
gccgtatattacacctatagatatagtttctatagatataagtttaaagaattggatcgaggagaaaatgtgtttgtatacgacgcgattcaacacttct |
262 |
Q |
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| T |
3122918 |
gccgtatattacacctatagatatagtttctatagatataagtttaaagaattggatcgaggagaaaatgtgtttgtatacgacgcgattcaacacttct |
3123017 |
T |
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| Q |
263 |
aacgtatatagttatgttaataccagtgtttatgtatcagtgtcgagtttaaagcaagttcgaactcggaaaacatgttcgtac |
346 |
Q |
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| T |
3123018 |
aacgtatatagttatgttaataccagtgtttatgtatcagtgtcgagtttaaagcaagttcgaactcggaaaacatgttcgtac |
3123101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 3122764 - 3122852
Alignment:
| Q |
9 |
tgagatgaagaagatcatggagaagatcacagagaaaatcaaaatcggcgtctgtgttatggaaaagaaggtgaaatgtggctccgagg |
97 |
Q |
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| T |
3122764 |
tgagaagaagaagatcatggagaagattacagagaaaatcaaaatcggcgtctgtgttatggaaaagaaggtgaaatgtggctccgagg |
3122852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 97
Target Start/End: Original strand, 1913760 - 1913799
Alignment:
| Q |
58 |
gtctgtgttatggaaaagaaggtgaaatgtggctccgagg |
97 |
Q |
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| T |
1913760 |
gtctgtgtgatggaaaagaaggtgaaatgtggcttcgagg |
1913799 |
T |
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